Non-Coding RNA Search

rspl23_o15.y1

Sequence:


               
               TAAGAGAAAACTTTGAAGCATCTTAATGAAGGGTTTGTGCTCGGGAGGACAGGAAGTGCT
GAGGGTGTGGTTTTTAGGAATTTCGTCATTGGATTTTTTGGTCAGGATCCTTAATGTTTT
GCAACAGCTTGGGCTTTTAAATTAGATGTGAAGTAAGACTTCTTTCTACATTTTTATAGT
TAATTTAGTGAAAGATGTGAAAGTGAAAGCTTGTGAAAGATGCTGGGATTGGCAGCCCCG
CAGACTGAAGTCCTCTGTTCATCCACAGAACAGGTACAGCACGGGCAAGATTACCCACCC
GCCCTCAGCCCTGATCTGGAGGGACCACCAGTAGGGGTGGGAGGGTAATTCAGCTTCTGA
GGCCCTTTCACTCCTTGGAGTCTTTGCTGAGGCGACTTACAAAGGTGACCACTGCAGTGA
AATTTTTCTTAAAAAAATGGAAACACAATTAGGAACTAGATGGACATTTCCGCTCATTTC
TGAAAGACCTGTGAACAGCAGTCAGTAATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGAGAAAACTTTGAAGCATCTTAATGAAGGGTTTGTGCTCGGGAGGACAGGAAGTGCT
GAGGGTGTGGTTTTTAGGAATTTCGTCATTGGATTTTTTGGTCAGGATCCTTAATGTTTT
GCAACAGCTTGGGCTTTTAAATTAGATGTGAAGTAAGACTTCTTTCTACATTTTTATAGT
TAATTTAGTGAAAGATGTGAAAGTGAAAGCTTGTGAAAGATGCTGGGATTGGCAGCCCCG
CAGACTGAAGTCCTCTGTTCATCCACAGAACAGGTACAGCACGGGCAAGATTACCCACCC
GCCCTCAGCCCTGATCTGGAGGGACCACCAGTAGGGGTGGGAGGGTAATTCAGCTTCTGA
GGCCCTTTCACTCCTTGGAGTCTTTGCTGAGGCGACTTACAAAGGTGACCACTGCAGTGA
AATTTTTCTTAAAAAAATGGAAACACAATTAGGAACTAGATGGACATTTCCGCTCATTTC
TGAAAGACCTGTGAACAGCAGTCAGTAATTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               80-437, + strand, RNAz p=0.997505

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-437, + strand, RNAz p=0.997505

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               322-391, + strand, RNAmicro p=0.918255

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               322-391, + strand, RNAmicro p=0.918255

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               89-250, mo37a11.r1 Life Tech mouse embryo 13 5dpc 10666014 Mus musculus 
(gb|AA118275.1|), blast E-value=0, identity=99.38% 
               

               
               89-240, zp83f01.r1 Stratagene HeLa cell s3 937216 Homo sapiens cDNA clone 
(gb|AA190945.1|), blast E-value=0, identity=96.77% 
               

               
               89-430, xj85a04.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone (gb|AW173231.1|), 
blast E-value=0, identity=97.67% 
               

               
               89-430, 7o16f12.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE 
(gb|BF431635.1|), blast E-value=0, identity=98.54% 
               

               
               89-430, AGENCOURT_31474610 NIH_MGC_251 Rattus norvegicus cDNA clone 
(gb|CV078411.1|), blast E-value=0, identity=97.38% 
               

               
               175-273, nbj46f06.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA 
(gb|EB388525.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               89-250, mo37a11.r1 Life Tech mouse embryo 13 5dpc 10666014 Mus musculus 
(gb|AA118275.1|), blast E-value=0, identity=99.38% 
               

               
               89-240, zp83f01.r1 Stratagene HeLa cell s3 937216 Homo sapiens cDNA clone 
(gb|AA190945.1|), blast E-value=0, identity=96.77% 
               

               
               89-430, xj85a04.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone (gb|AW173231.1|), 
blast E-value=0, identity=97.67% 
               

               
               89-430, 7o16f12.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE 
(gb|BF431635.1|), blast E-value=0, identity=98.54% 
               

               
               89-430, AGENCOURT_31474610 NIH_MGC_251 Rattus norvegicus cDNA clone 
(gb|CV078411.1|), blast E-value=0, identity=97.38% 
               

               
               175-273, nbj46f06.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA 
(gb|EB388525.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-437, gnl|bosTau2|chr7 (38601069-38601504)
               

               
               1-437, gnl|Hg17|chr5 (145869643-145870091)
               

               
               1-437, gnl|Mm7|chr18 (42951898-42952331)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-437, gnl|bosTau2|chr7 (38601069-38601504)
               

               
               1-437, gnl|Hg17|chr5 (145869643-145870091)
               

               
               1-437, gnl|Mm7|chr18 (42951898-42952331)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	89-250, mo37a11.r1 Life Tech mouse embryo 13 5dpc 10666014 Mus musculus (gb\|AA118275.1\|), blast E-value=0, identity=99.38%
	89-240, zp83f01.r1 Stratagene HeLa cell s3 937216 Homo sapiens cDNA clone (gb\|AA190945.1\|), blast E-value=0, identity=96.77%
	89-430, xj85a04.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone (gb\|AW173231.1\|), blast E-value=0, identity=97.67%
	89-430, 7o16f12.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE (gb\|BF431635.1\|), blast E-value=0, identity=98.54%
	89-430, AGENCOURT_31474610 NIH_MGC_251 Rattus norvegicus cDNA clone (gb\|CV078411.1\|), blast E-value=0, identity=97.38%
	175-273, nbj46f06.y1 Human optic nerve. Unnormalized (nbj) Homo sapiens cDNA (gb\|EB388525.1\|), blast E-value=0, identity=100%

	1-437, gnl\|bosTau2\|chr7 (38601069-38601504)
	1-437, gnl\|Hg17\|chr5 (145869643-145870091)
	1-437, gnl\|Mm7\|chr18 (42951898-42952331)