Non-Coding RNA Search

rspl24_a20.y1

Sequence:


               
               AATCAAAATCATTTGTCATCCTCTTTGGCTTATTGAATGAAACGTGTCTCCTCCTTTGGG
GACATGGCAAAGATGAGAAAGATTTGGTTTCTGAGGCTTCAGGGTGGAGATTCCAAGTGG
GATGGTTATGGCATAGTTTAAGCTGAGTAAATGATTTCACTTTGGGCAGTTTTTCTGCTT
TTTGTGAAGCCATGGCCAGTTGTCTCTTGTAGTGACCATTGGTTCAGGCATGTTGTACTT
TGTAGGGACAAATGTGCAGTTGTTTGTGGCGAAAGCCTAAAAGTGACAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAAAATCATTTGTCATCCTCTTTGGCTTATTGAATGAAACGTGTCTCCTCCTTTGGG
GACATGGCAAAGATGAGAAAGATTTGGTTTCTGAGGCTTCAGGGTGGAGATTCCAAGTGG
GATGGTTATGGCATAGTTTAAGCTGAGTAAATGATTTCACTTTGGGCAGTTTTTCTGCTT
TTTGTGAAGCCATGGCCAGTTGTCTCTTGTAGTGACCATTGGTTCAGGCATGTTGTACTT
TGTAGGGACAAATGTGCAGTTGTTTGTGGCGAAAGCCTAAAAGTGACAAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               155-291, + strand, RNAz p=0.737189

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-291, + strand, RNAz p=0.737189

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC039583, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC039583, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               7-291, gnl|bosTau2|chr26 (16652369-16652088)
               

               
               7-291, gnl|canFam2|chr28 (17374019-17374717)
               

               
               7-291, gnl|dasNov1|scaffold_1670 (19872-20597)
               

               
               7-291, gnl|echTel1|scaffold_315161 (11829-12532)
               

               
               7-291, gnl|galGal2|chr6 (21807840-21807188)
               

               
               7-291, gnl|hg17|chr10 (103535344-103536064)
               

               
               7-291, gnl|Hg17|chr10 (103535845-103535547)
               

               
               7-291, gnl|loxAfr1|scaffold_36743 (25700-24991)
               

               
               7-291, gnl|mm7|chr19 (45648291-45648909)
               

               
               7-291, gnl|monDom2|scaffold_14 (61686742-61686044)
               

               
               7-291, gnl|panTro1|chr8 (105291751-105292472)
               

               
               7-291, gnl|rheMac2|chr9 (101420606-101421308)
               

               
               7-291, gnl|rn3|chr1 (251226205-251226824)
               

               
               7-291, gnl|xenTro1|scaffold_708 (415680-416336)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-291, gnl|bosTau2|chr26 (16652369-16652088)
               

               
               7-291, gnl|canFam2|chr28 (17374019-17374717)
               

               
               7-291, gnl|dasNov1|scaffold_1670 (19872-20597)
               

               
               7-291, gnl|echTel1|scaffold_315161 (11829-12532)
               

               
               7-291, gnl|galGal2|chr6 (21807840-21807188)
               

               
               7-291, gnl|hg17|chr10 (103535344-103536064)
               

               
               7-291, gnl|Hg17|chr10 (103535845-103535547)
               

               
               7-291, gnl|loxAfr1|scaffold_36743 (25700-24991)
               

               
               7-291, gnl|mm7|chr19 (45648291-45648909)
               

               
               7-291, gnl|monDom2|scaffold_14 (61686742-61686044)
               

               
               7-291, gnl|panTro1|chr8 (105291751-105292472)
               

               
               7-291, gnl|rheMac2|chr9 (101420606-101421308)
               

               
               7-291, gnl|rn3|chr1 (251226205-251226824)
               

               
               7-291, gnl|xenTro1|scaffold_708 (415680-416336)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	7-291, gnl\|bosTau2\|chr26 (16652369-16652088)
	7-291, gnl\|canFam2\|chr28 (17374019-17374717)
	7-291, gnl\|dasNov1\|scaffold_1670 (19872-20597)
	7-291, gnl\|echTel1\|scaffold_315161 (11829-12532)
	7-291, gnl\|galGal2\|chr6 (21807840-21807188)
	7-291, gnl\|hg17\|chr10 (103535344-103536064)
	7-291, gnl\|Hg17\|chr10 (103535845-103535547)
	7-291, gnl\|loxAfr1\|scaffold_36743 (25700-24991)
	7-291, gnl\|mm7\|chr19 (45648291-45648909)
	7-291, gnl\|monDom2\|scaffold_14 (61686742-61686044)
	7-291, gnl\|panTro1\|chr8 (105291751-105292472)
	7-291, gnl\|rheMac2\|chr9 (101420606-101421308)
	7-291, gnl\|rn3\|chr1 (251226205-251226824)
	7-291, gnl\|xenTro1\|scaffold_708 (415680-416336)