Non-Coding RNA Search

rspl25_f24.y1

Sequence:


               
               TTCTGGATCTTAAAGGATTAATCTTGGACATTCATCAAGAAGGAATCTGCAGTGAACCTA
CGTAGGATTTCTTCCCTTCAAAAGCCTTAAAAATATTTTACAAGTTGCTAGACCATCCTA
ACTATTACTGTTGCTAACAAGCTCCTCTCACCAACATGTTCACTTCATAGGACACATTGC
AAGCTGACATTTGGGAGCATGGAGCATTAGCTTTTTTCCAATTTTTTTTTTTTTTTAATC
TGAAGAATTTTTCTGTTTAAAACAAAACTGAAATCTGTTATATCCATTTTAGAACTTAAT
CGCTGTAGTTTTTACATCCATACACTCGTGGTGAGTTTAAAAAATATGTCTGTTCAGAAT
ACTTTGATCTTGTTAGAAATCCACCATAGAAAAATGGAACTTTAATGTTATTTTGATGTG
AGTCAAATCATTGGCAAATTTTTCCTCCTTTCATGGGTTTCTAGTGTCATGCATGGTGTT
GCCTTCTATGTAAATGTACCAATGAATAAATGTTTAGTAAACAGTCATTCTGTATCTCAT
TGTTTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGGATCTTAAAGGATTAATCTTGGACATTCATCAAGAAGGAATCTGCAGTGAACCTA
CGTAGGATTTCTTCCCTTCAAAAGCCTTAAAAATATTTTACAAGTTGCTAGACCATCCTA
ACTATTACTGTTGCTAACAAGCTCCTCTCACCAACATGTTCACTTCATAGGACACATTGC
AAGCTGACATTTGGGAGCATGGAGCATTAGCTTTTTTCCAATTTTTTTTTTTTTTTAATC
TGAAGAATTTTTCTGTTTAAAACAAAACTGAAATCTGTTATATCCATTTTAGAACTTAAT
CGCTGTAGTTTTTACATCCATACACTCGTGGTGAGTTTAAAAAATATGTCTGTTCAGAAT
ACTTTGATCTTGTTAGAAATCCACCATAGAAAAATGGAACTTTAATGTTATTTTGATGTG
AGTCAAATCATTGGCAAATTTTTCCTCCTTTCATGGGTTTCTAGTGTCATGCATGGTGTT
GCCTTCTATGTAAATGTACCAATGAATAAATGTTTAGTAAACAGTCATTCTGTATCTCAT
TGTTTCAC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               4-136, gnl|bosTau2|chr12 (29648726-29648857)
               

               
               4-136, gnl|canFam2|chr2 (5570344-5569848)
               

               
               4-136, gnl|hg17|chr10 (34673559-34674036)
               

               
               4-136, gnl|loxAfr1|scaffold_7600 (30294-30784)
               

               
               4-136, gnl|mm7|chr8 (126010421-126009826)
               

               
               4-136, gnl|oryCun1|scaffold_206239 (137944-138390)
               

               
               4-136, gnl|panTro1|chr8 (35097496-35097977)
               

               
               4-136, gnl|rheMac2|chr9 (34530776-34531250)
               

               
               4-136, gnl|rn3|chr19 (57384260-57383760)
               


               
               140-548, gnl|bosTau2|chr12 (29648890-29649280)
               

               
               140-548, gnl|Hg17|chr10 (34673165-34672786)
               

               
               140-548, gnl|Mm7|chr8 (126010462-126010844)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-136, gnl|bosTau2|chr12 (29648726-29648857)
               

               
               4-136, gnl|canFam2|chr2 (5570344-5569848)
               

               
               4-136, gnl|hg17|chr10 (34673559-34674036)
               

               
               4-136, gnl|loxAfr1|scaffold_7600 (30294-30784)
               

               
               4-136, gnl|mm7|chr8 (126010421-126009826)
               

               
               4-136, gnl|oryCun1|scaffold_206239 (137944-138390)
               

               
               4-136, gnl|panTro1|chr8 (35097496-35097977)
               

               
               4-136, gnl|rheMac2|chr9 (34530776-34531250)
               

               
               4-136, gnl|rn3|chr19 (57384260-57383760)
               


               
               140-548, gnl|bosTau2|chr12 (29648890-29649280)
               

               
               140-548, gnl|Hg17|chr10 (34673165-34672786)
               

               
               140-548, gnl|Mm7|chr8 (126010462-126010844)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	4-136, gnl\|bosTau2\|chr12 (29648726-29648857)
	4-136, gnl\|canFam2\|chr2 (5570344-5569848)
	4-136, gnl\|hg17\|chr10 (34673559-34674036)
	4-136, gnl\|loxAfr1\|scaffold_7600 (30294-30784)
	4-136, gnl\|mm7\|chr8 (126010421-126009826)
	4-136, gnl\|oryCun1\|scaffold_206239 (137944-138390)
	4-136, gnl\|panTro1\|chr8 (35097496-35097977)
	4-136, gnl\|rheMac2\|chr9 (34530776-34531250)
	4-136, gnl\|rn3\|chr19 (57384260-57383760)

	140-548, gnl\|bosTau2\|chr12 (29648890-29649280)
	140-548, gnl\|Hg17\|chr10 (34673165-34672786)
	140-548, gnl\|Mm7\|chr8 (126010462-126010844)