Non-Coding RNA Search

rspl25_n17.y1

Sequence:


               
               CCCTGCTTCTTACATCAATCCAGATCACCTGAAATATTTTCGTTTTATTGGCAGGTTTAT
TGCTATGGCTCTATTCCATGGGAAGTTCATAGACACAGGTTTTTCTTTGCCATTCTATAA
GCGTATCTTGAACAAACCAGTTGGACTCAAGGATTTAGAATCTATTGATCCAGAATTTTA
TAATTCTCTCATCTGGGTTAGAGAAAACAATATTGAGGAATGTGGTTTGGAAATGTATTT
CTCCGTTGATAAAGAAATTTTAGGTGAAATCAAGAGTCATGATTTGAAACCCAATGGTGG
CAATATTCTTGTAACAGAAGAAAATAAAGAGGAATACATCAGAATGGTAGCTGAATGGAG
GTTGTCTCGTGGTGTTGAAGAACAGATACAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGCTTCTTACATCAATCCAGATCACCTGAAATATTTTCGTTTTATTGGCAGGTTTAT
TGCTATGGCTCTATTCCATGGGAAGTTCATAGACACAGGTTTTTCTTTGCCATTCTATAA
GCGTATCTTGAACAAACCAGTTGGACTCAAGGATTTAGAATCTATTGATCCAGAATTTTA
TAATTCTCTCATCTGGGTTAGAGAAAACAATATTGAGGAATGTGGTTTGGAAATGTATTT
CTCCGTTGATAAAGAAATTTTAGGTGAAATCAAGAGTCATGATTTGAAACCCAATGGTGG
CAATATTCTTGTAACAGAAGAAAATAAAGAGGAATACATCAGAATGGTAGCTGAATGGAG
GTTGTCTCGTGGTGTTGAAGAACAGATACAAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-200, - strand, RNAz p=0.940393

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-200, - strand, RNAz p=0.940393

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               57-200, gnl|bosTau2|chr13 (47479665-47479522)
               

               
               57-200, gnl|canFam2|chr24 (26579915-26580030)
               

               
               57-200, gnl|danRer3|chr14 (37112585-37112470)
               

               
               57-200, gnl|dasNov1|scaffold_4962 (17149-17264)
               

               
               57-200, gnl|echTel1|scaffold_296055 (2772-2675)
               

               
               57-200, gnl|fr1|chrUn (124319116-124319001)
               

               
               57-200, gnl|galGal2|chr20 (1360771-1360656)
               

               
               57-200, gnl|hg17|chr20 (32532050-32532165)
               

               
               57-200, gnl|Hg17|chr20 (32532054-32532197)
               

               
               57-200, gnl|loxAfr1|scaffold_208766 (990-1105)
               

               
               57-200, gnl|mm7|chr2 (154950830-154950945)
               

               
               57-200, gnl|Mm7|chr2 (154950834-154950977)
               

               
               57-200, gnl|monDom2|scaffold_6 (12497479-12497364)
               

               
               57-200, gnl|oryCun1|scaffold_215145 (35483-35372)
               

               
               57-200, gnl|panTro1|chr21 (34541963-34542078)
               

               
               57-200, gnl|rheMac2|chr10 (30083869-30083754)
               

               
               57-200, gnl|rn3|chr3 (145598573-145598686)
               

               
               57-200, gnl|tetNig1|chr11 (7202940-7202825)
               

               
               57-200, gnl|xenTro1|scaffold_35 (1403343-1403228)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-200, gnl|bosTau2|chr13 (47479665-47479522)
               

               
               57-200, gnl|canFam2|chr24 (26579915-26580030)
               

               
               57-200, gnl|danRer3|chr14 (37112585-37112470)
               

               
               57-200, gnl|dasNov1|scaffold_4962 (17149-17264)
               

               
               57-200, gnl|echTel1|scaffold_296055 (2772-2675)
               

               
               57-200, gnl|fr1|chrUn (124319116-124319001)
               

               
               57-200, gnl|galGal2|chr20 (1360771-1360656)
               

               
               57-200, gnl|hg17|chr20 (32532050-32532165)
               

               
               57-200, gnl|Hg17|chr20 (32532054-32532197)
               

               
               57-200, gnl|loxAfr1|scaffold_208766 (990-1105)
               

               
               57-200, gnl|mm7|chr2 (154950830-154950945)
               

               
               57-200, gnl|Mm7|chr2 (154950834-154950977)
               

               
               57-200, gnl|monDom2|scaffold_6 (12497479-12497364)
               

               
               57-200, gnl|oryCun1|scaffold_215145 (35483-35372)
               

               
               57-200, gnl|panTro1|chr21 (34541963-34542078)
               

               
               57-200, gnl|rheMac2|chr10 (30083869-30083754)
               

               
               57-200, gnl|rn3|chr3 (145598573-145598686)
               

               
               57-200, gnl|tetNig1|chr11 (7202940-7202825)
               

               
               57-200, gnl|xenTro1|scaffold_35 (1403343-1403228)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	57-200, gnl\|bosTau2\|chr13 (47479665-47479522)
	57-200, gnl\|canFam2\|chr24 (26579915-26580030)
	57-200, gnl\|danRer3\|chr14 (37112585-37112470)
	57-200, gnl\|dasNov1\|scaffold_4962 (17149-17264)
	57-200, gnl\|echTel1\|scaffold_296055 (2772-2675)
	57-200, gnl\|fr1\|chrUn (124319116-124319001)
	57-200, gnl\|galGal2\|chr20 (1360771-1360656)
	57-200, gnl\|hg17\|chr20 (32532050-32532165)
	57-200, gnl\|Hg17\|chr20 (32532054-32532197)
	57-200, gnl\|loxAfr1\|scaffold_208766 (990-1105)
	57-200, gnl\|mm7\|chr2 (154950830-154950945)
	57-200, gnl\|Mm7\|chr2 (154950834-154950977)
	57-200, gnl\|monDom2\|scaffold_6 (12497479-12497364)
	57-200, gnl\|oryCun1\|scaffold_215145 (35483-35372)
	57-200, gnl\|panTro1\|chr21 (34541963-34542078)
	57-200, gnl\|rheMac2\|chr10 (30083869-30083754)
	57-200, gnl\|rn3\|chr3 (145598573-145598686)
	57-200, gnl\|tetNig1\|chr11 (7202940-7202825)
	57-200, gnl\|xenTro1\|scaffold_35 (1403343-1403228)