rspl30_e17.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACTTTGTCTCCAGAGGTATATCTAAATCTCAGACTTTCCACTGAAATATCAGAGAAACC TCTGTCACCTTCATCATCTGAAAGGCTTGGACACACTTACATCAATGTGATTGACATTGA AGCTGATGAACTACAGGAATTACCTGTCAGAGAAGAGTCTTCAGATGATAATATTATCAA ACAACAAATTGATCATCTGGAAGTCCCATCTTCTGCAGAATTACATTATATGGCAGCTTC CGTTACTAATGCTGTTTCCCTGCACAACTTTAAGAGTCAAGAATCTGCCAGTTCCACTAT GGATTTATATTTTAAACCTGCAAAAGAGTCTCCATCCTGTCTGGATGGAAGAAGCTGGAG AGCAGGCATGACAGAAGTGAAGGAGCCTGGCATCACCTCACCTATACCATCAGACACACA GCAGGACAAAGATATGCTGAAGCCAGATTTTCAGTTCAAAGAACAGAGCTCAAAGTCAGA TGCTGCAGAACTTTATCCACTGTGGGAACTACTGCAGGAAGTCTCTGAAACTGACCCTGC ACCTCGTCCTGCAGCTCGTCTTGCAGCTCGTCCTGCACCCAGCTCTACAGCTCGCCGACT A |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACTTTGTCTCCAGAGGTATATCTAAATCTCAGACTTTCCACTGAAATATCAGAGAAACC TCTGTCACCTTCATCATCTGAAAGGCTTGGACACACTTACATCAATGTGATTGACATTGA AGCTGATGAACTACAGGAATTACCTGTCAGAGAAGAGTCTTCAGATGATAATATTATCAA ACAACAAATTGATCATCTGGAAGTCCCATCTTCTGCAGAATTACATTATATGGCAGCTTC CGTTACTAATGCTGTTTCCCTGCACAACTTTAAGAGTCAAGAATCTGCCAGTTCCACTAT GGATTTATATTTTAAACCTGCAAAAGAGTCTCCATCCTGTCTGGATGGAAGAAGCTGGAG AGCAGGCATGACAGAAGTGAAGGAGCCTGGCATCACCTCACCTATACCATCAGACACACA GCAGGACAAAGATATGCTGAAGCCAGATTTTCAGTTCAAAGAACAGAGCTCAAAGTCAGA TGCTGCAGAACTTTATCCACTGTGGGAACTACTGCAGGAAGTCTCTGAAACTGACCCTGC ACCTCGTCCTGCAGCTCGTCTTGCAGCTCGTCCTGCACCCAGCTCTACAGCTCGCCGACT A |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 280-397, + strand, RNAz p=0.508082 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 280-397, + strand, RNAz p=0.508082 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 87-260, gnl|bosTau2|chr20 (24666660-24666493) | |
| 87-260, gnl|canFam2|chr4 (74724786-74724401) | |
| 87-260, gnl|dasNov1|scaffold_187792 (4066-3651) | |
| 87-260, gnl|echTel1|scaffold_240260 (6646-6257) | |
| 87-260, gnl|galGal2|chrZ_random (10482945-10483317) | |
| 87-260, gnl|hg17|chr5 (37193405-37193799) | |
| 87-260, gnl|Hg17|chr5 (37193726-37193550) | |
| 87-260, gnl|loxAfr1|scaffold_55169 (26400-26017) | |
| 87-260, gnl|mm7|chr15 (8071345-8070971) | |
| 87-260, gnl|Mm7|chr15 (8071035-8071205) | |
| 87-260, gnl|monDom2|scaffold_20 (35016938-35016513) | |
| 87-260, gnl|oryCun1|scaffold_177270 (44213-44590) | |
| 87-260, gnl|panTro1|chr4 (79566165-79565770) | |
| 87-260, gnl|rheMac2|chr6 (36987393-36987781) | |
| 87-260, gnl|rn3|chr2 (57783025-57782658) | |
| 280-431, gnl|bosTau2|chr20 (24666248-24666097) | |
| 280-431, gnl|canFam2|chr4 (74725204-74725036) | |
| 280-431, gnl|dasNov1|scaffold_187792 (4303-4135) | |
| 280-431, gnl|echTel1|scaffold_240260 (6874-6706) | |
| 280-431, gnl|hg17|chr5 (37193168-37193336) | |
| 280-431, gnl|Hg17|chr5 (37193323-37193172) | |
| 280-431, gnl|loxAfr1|scaffold_55169 (26642-26474) | |
| 280-431, gnl|mm7|chr15 (8071580-8071409) | |
| 280-431, gnl|Mm7|chr15 (8071420-8071574) | |
| 280-431, gnl|oryCun1|scaffold_177270 (43987-44152) | |
| 280-431, gnl|panTro1|chr4 (79566402-79566234) | |
| 280-431, gnl|rheMac2|chr6 (36987156-36987324) | |
| 280-431, gnl|rn3|chr2 (57783397-57783229) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-260, gnl|bosTau2|chr20 (24666660-24666493) | |
| 87-260, gnl|canFam2|chr4 (74724786-74724401) | |
| 87-260, gnl|dasNov1|scaffold_187792 (4066-3651) | |
| 87-260, gnl|echTel1|scaffold_240260 (6646-6257) | |
| 87-260, gnl|galGal2|chrZ_random (10482945-10483317) | |
| 87-260, gnl|hg17|chr5 (37193405-37193799) | |
| 87-260, gnl|Hg17|chr5 (37193726-37193550) | |
| 87-260, gnl|loxAfr1|scaffold_55169 (26400-26017) | |
| 87-260, gnl|mm7|chr15 (8071345-8070971) | |
| 87-260, gnl|Mm7|chr15 (8071035-8071205) | |
| 87-260, gnl|monDom2|scaffold_20 (35016938-35016513) | |
| 87-260, gnl|oryCun1|scaffold_177270 (44213-44590) | |
| 87-260, gnl|panTro1|chr4 (79566165-79565770) | |
| 87-260, gnl|rheMac2|chr6 (36987393-36987781) | |
| 87-260, gnl|rn3|chr2 (57783025-57782658) | |
| 280-431, gnl|bosTau2|chr20 (24666248-24666097) | |
| 280-431, gnl|canFam2|chr4 (74725204-74725036) | |
| 280-431, gnl|dasNov1|scaffold_187792 (4303-4135) | |
| 280-431, gnl|echTel1|scaffold_240260 (6874-6706) | |
| 280-431, gnl|hg17|chr5 (37193168-37193336) | |
| 280-431, gnl|Hg17|chr5 (37193323-37193172) | |
| 280-431, gnl|loxAfr1|scaffold_55169 (26642-26474) | |
| 280-431, gnl|mm7|chr15 (8071580-8071409) | |
| 280-431, gnl|Mm7|chr15 (8071420-8071574) | |
| 280-431, gnl|oryCun1|scaffold_177270 (43987-44152) | |
| 280-431, gnl|panTro1|chr4 (79566402-79566234) | |
| 280-431, gnl|rheMac2|chr6 (36987156-36987324) | |
| 280-431, gnl|rn3|chr2 (57783397-57783229) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) |