Non-Coding RNA Search

rspl33_d15.y1

Sequence:


               
               TTTTTAAATCATCATGAAAAATGTACTAATCATAGGTCTTACCTCAAGAAGTTTCCAAGA
ACTCTTCCCCAGAAATTTTAGAGTGCTGGTGAACCTAAAAATAACAACCCAGCAGCTTAC
TGAGCAGCTGGATATGAATATACCCAAAGCAAAAGTGTTTGTTCTGTACTCCCAGAACAC
AGCATGATGAAAATAGAAATAAATAATAAAACTAGCCACAACCACTCAACCATCTGGACA
TTTTTAGATCTTCTCCTAAATCACAGCTGATTTAAACAGGGAAATTGACAAAAAGATACC
CTACGTGGGATATGTTTGGGAACCCGGAGTAATCAAACCTCTAGGTTCAAACATCTAGAG
TAATCCACTCTAGATGATGCAGCCAAAGCACTCCTTAGAGGAAAAGCCATAGCTTTAAAT
GACTTCTATTATGGAAAGTGTGTTAGGGGTGGGGGTGGGAGGGCAGGGATGGAATAATGG
GTCAAACAAATAAATTTCATCCAGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTAAATCATCATGAAAAATGTACTAATCATAGGTCTTACCTCAAGAAGTTTCCAAGA
ACTCTTCCCCAGAAATTTTAGAGTGCTGGTGAACCTAAAAATAACAACCCAGCAGCTTAC
TGAGCAGCTGGATATGAATATACCCAAAGCAAAAGTGTTTGTTCTGTACTCCCAGAACAC
AGCATGATGAAAATAGAAATAAATAATAAAACTAGCCACAACCACTCAACCATCTGGACA
TTTTTAGATCTTCTCCTAAATCACAGCTGATTTAAACAGGGAAATTGACAAAAAGATACC
CTACGTGGGATATGTTTGGGAACCCGGAGTAATCAAACCTCTAGGTTCAAACATCTAGAG
TAATCCACTCTAGATGATGCAGCCAAAGCACTCCTTAGAGGAAAAGCCATAGCTTTAAAT
GACTTCTATTATGGAAAGTGTGTTAGGGGTGGGGGTGGGAGGGCAGGGATGGAATAATGG
GTCAAACAAATAAATTTCATCCAGGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               79-197, - strand, RNAz p=0.840309

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.840309

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               2-342, gnl|bosTau2|chr3 (80797532-80797199)
               

               
               2-342, gnl|Hg17|chr2 (233825977-233826315)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-342, gnl|bosTau2|chr3 (80797532-80797199)
               

               
               2-342, gnl|Hg17|chr2 (233825977-233826315)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	2-342, gnl\|bosTau2\|chr3 (80797532-80797199)
	2-342, gnl\|Hg17\|chr2 (233825977-233826315)