Non-Coding RNA Search

rspl35_e22.y1

Sequence:


               
               GGGGTTTTTATTGCTCTGTGAAATTCAAATTAAATTATAAAAGGCTCTGGATTTTATTTG
ATTTTGCTCATAACAAATTTTTGACACCTCCTTTTCCCCTTTCCTCAGTATTTGAGATTT
TTTTCTATTGTGCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTTTTTATTGCTCTGTGAAATTCAAATTAAATTATAAAAGGCTCTGGATTTTATTTG
ATTTTGCTCATAACAAATTTTTGACACCTCCTTTTCCCCTTTCCTCAGTATTTGAGATTT
TTTTCTATTGTGCATG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-136, gnl|bosTau2|chr3 (28547889-28547752)
               

               
               1-136, gnl|canFam2|chr6 (43908546-43908311)
               

               
               1-136, gnl|dasNov1|scaffold_61676 (4839-4608)
               

               
               1-136, gnl|echTel1|scaffold_106538 (890-653)
               

               
               1-136, gnl|galGal2|chr32 (82691-82940)
               

               
               1-136, gnl|hg17|chr1 (111429276-111429514)
               

               
               1-136, gnl|Hg17|chr1 (111429317-111429456)
               

               
               1-136, gnl|loxAfr1|scaffold_46824 (21044-20814)
               

               
               1-136, gnl|mm7|chr3 (106331422-106331207)
               

               
               1-136, gnl|Mm7|chr3 (106331402-106331265)
               

               
               1-136, gnl|monDom2|scaffold_0 (4690337-4690097)
               

               
               1-136, gnl|oryCun1|scaffold_207810 (141356-141124)
               

               
               1-136, gnl|panTro1|chr1 (110856897-110856659)
               

               
               1-136, gnl|rheMac2|chr1 (114211915-114212153)
               

               
               1-136, gnl|rn3|chr2 (201773978-201773745)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-136, gnl|bosTau2|chr3 (28547889-28547752)
               

               
               1-136, gnl|canFam2|chr6 (43908546-43908311)
               

               
               1-136, gnl|dasNov1|scaffold_61676 (4839-4608)
               

               
               1-136, gnl|echTel1|scaffold_106538 (890-653)
               

               
               1-136, gnl|galGal2|chr32 (82691-82940)
               

               
               1-136, gnl|hg17|chr1 (111429276-111429514)
               

               
               1-136, gnl|Hg17|chr1 (111429317-111429456)
               

               
               1-136, gnl|loxAfr1|scaffold_46824 (21044-20814)
               

               
               1-136, gnl|mm7|chr3 (106331422-106331207)
               

               
               1-136, gnl|Mm7|chr3 (106331402-106331265)
               

               
               1-136, gnl|monDom2|scaffold_0 (4690337-4690097)
               

               
               1-136, gnl|oryCun1|scaffold_207810 (141356-141124)
               

               
               1-136, gnl|panTro1|chr1 (110856897-110856659)
               

               
               1-136, gnl|rheMac2|chr1 (114211915-114212153)
               

               
               1-136, gnl|rn3|chr2 (201773978-201773745)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-136, gnl\|bosTau2\|chr3 (28547889-28547752)
	1-136, gnl\|canFam2\|chr6 (43908546-43908311)
	1-136, gnl\|dasNov1\|scaffold_61676 (4839-4608)
	1-136, gnl\|echTel1\|scaffold_106538 (890-653)
	1-136, gnl\|galGal2\|chr32 (82691-82940)
	1-136, gnl\|hg17\|chr1 (111429276-111429514)
	1-136, gnl\|Hg17\|chr1 (111429317-111429456)
	1-136, gnl\|loxAfr1\|scaffold_46824 (21044-20814)
	1-136, gnl\|mm7\|chr3 (106331422-106331207)
	1-136, gnl\|Mm7\|chr3 (106331402-106331265)
	1-136, gnl\|monDom2\|scaffold_0 (4690337-4690097)
	1-136, gnl\|oryCun1\|scaffold_207810 (141356-141124)
	1-136, gnl\|panTro1\|chr1 (110856897-110856659)
	1-136, gnl\|rheMac2\|chr1 (114211915-114212153)
	1-136, gnl\|rn3\|chr2 (201773978-201773745)