Non-Coding RNA Search

rspl35_g23.y1

Sequence:


               
               TAACATGCATAACATGTAGGATACATTTTTAAAAGTCAAAAAATCTACCAATATTACAAT
GTAATATAATGAATTGATGCATATTAAGCACTTAGTGCAGTGGTTGGCATATAATAAGTG
TTAAAATAGATGAGTAGAAAGATGAGGACAGAATCTACAAGGTTTCTTTGGGAAGACAAA
TGAGACTGTGTCCCAGTTTCCTAATTACTTGATCCTCAGAGATAAGAGTATAATTTACAC
TGCCTAAAGCAGGTTTCTTAAAAATACATATCATATGTTCTTGAGGTATATTAAGGTGTG
TTTTGGAAACAGGGATCTCTGACAAGAAATATTATGAATCACTTTCTCCACTAAGAATAT
TTTTTAAGCTCCTTAAAAAAGAGGCATCTGATTTTGCTACATTTTCATATTCAAGACATG
GCAAAGCATGTCTGATATGAATGTATACCCACTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACATGCATAACATGTAGGATACATTTTTAAAAGTCAAAAAATCTACCAATATTACAAT
GTAATATAATGAATTGATGCATATTAAGCACTTAGTGCAGTGGTTGGCATATAATAAGTG
TTAAAATAGATGAGTAGAAAGATGAGGACAGAATCTACAAGGTTTCTTTGGGAAGACAAA
TGAGACTGTGTCCCAGTTTCCTAATTACTTGATCCTCAGAGATAAGAGTATAATTTACAC
TGCCTAAAGCAGGTTTCTTAAAAATACATATCATATGTTCTTGAGGTATATTAAGGTGTG
TTTTGGAAACAGGGATCTCTGACAAGAAATATTATGAATCACTTTCTCCACTAAGAATAT
TTTTTAAGCTCCTTAAAAAAGAGGCATCTGATTTTGCTACATTTTCATATTCAAGACATG
GCAAAGCATGTCTGATATGAATGTATACCCACTCCC

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               4-456, gnl|bosTau2|chr11 (13367082-13367536)
               

               
               4-456, gnl|canFam2|chr17 (29381351-29381922)
               

               
               4-456, gnl|dasNov1|scaffold_2862 (46807-47389)
               

               
               4-456, gnl|echTel1|scaffold_319158 (9754-10345)
               

               
               4-456, gnl|hg17|chr2 (33259964-33260550)
               

               
               4-456, gnl|Hg17|chr2 (33260594-33260149)
               

               
               4-456, gnl|loxAfr1|scaffold_31036 (34006-34577)
               

               
               4-456, gnl|mm7|chr17 (73453168-73453670)
               

               
               4-456, gnl|monDom2|scaffold_1 (140757347-140756665)
               

               
               4-456, gnl|oryCun1|scaffold_205572 (184017-183471)
               

               
               4-456, gnl|panTro1|chr12 (34287708-34288299)
               

               
               4-456, gnl|rheMac2|chr13 (33111582-33112135)
               

               
               4-456, gnl|rn3|chr6 (20172974-20172473)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-456, gnl|bosTau2|chr11 (13367082-13367536)
               

               
               4-456, gnl|canFam2|chr17 (29381351-29381922)
               

               
               4-456, gnl|dasNov1|scaffold_2862 (46807-47389)
               

               
               4-456, gnl|echTel1|scaffold_319158 (9754-10345)
               

               
               4-456, gnl|hg17|chr2 (33259964-33260550)
               

               
               4-456, gnl|Hg17|chr2 (33260594-33260149)
               

               
               4-456, gnl|loxAfr1|scaffold_31036 (34006-34577)
               

               
               4-456, gnl|mm7|chr17 (73453168-73453670)
               

               
               4-456, gnl|monDom2|scaffold_1 (140757347-140756665)
               

               
               4-456, gnl|oryCun1|scaffold_205572 (184017-183471)
               

               
               4-456, gnl|panTro1|chr12 (34287708-34288299)
               

               
               4-456, gnl|rheMac2|chr13 (33111582-33112135)
               

               
               4-456, gnl|rn3|chr6 (20172974-20172473)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	4-456, gnl\|bosTau2\|chr11 (13367082-13367536)
	4-456, gnl\|canFam2\|chr17 (29381351-29381922)
	4-456, gnl\|dasNov1\|scaffold_2862 (46807-47389)
	4-456, gnl\|echTel1\|scaffold_319158 (9754-10345)
	4-456, gnl\|hg17\|chr2 (33259964-33260550)
	4-456, gnl\|Hg17\|chr2 (33260594-33260149)
	4-456, gnl\|loxAfr1\|scaffold_31036 (34006-34577)
	4-456, gnl\|mm7\|chr17 (73453168-73453670)
	4-456, gnl\|monDom2\|scaffold_1 (140757347-140756665)
	4-456, gnl\|oryCun1\|scaffold_205572 (184017-183471)
	4-456, gnl\|panTro1\|chr12 (34287708-34288299)
	4-456, gnl\|rheMac2\|chr13 (33111582-33112135)
	4-456, gnl\|rn3\|chr6 (20172974-20172473)