Non-Coding RNA Search

rspl35_i23.y1

Sequence:


               
               GAAGAGAGAGAGAGCCATCTCTGGAGAACAAAACTACCCCATTCCCTTGGAAGCCACCCT
CTGGAGCGCTAGATTTGACCACATCTGTTTTGAGGACTCATTATGAACAAAGAAGTCCCT
CAGGTGTGAAGTTTTTCAACATGAGTGGCCTTGGGGACAGTTCATCTGACCCTGCTAACC
CAGACTCACATAAGAGAAAAGGATCACCATGTGACACATTGGCATCAAGCACTGAAAAAA
GGCGCAGGGAACAAGAAAATAAATATTTAGAAGAGCTAGCTGAGTTACTGTCTGCCAACA
TCAGTGACATTGACAGCTTGAGTGTAAAACCAGACAAATGCAAGATATTAAAGAAGACAG
TCGATCAGATACAGCTAATGAAGAGAATGGAACAAGAGAAATCAACAACTGATGATGAAG
TACAGAAATCAGATATCTCGTCGAGTAGTCAAGGGGTGATAGAAAAAGAATCCTTGGGAC
CTCTTCTTTTGGAGGTAGCTGTTCTCATTGTCTCAGAAAAAGTGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGAGAGAGAGCCATCTCTGGAGAACAAAACTACCCCATTCCCTTGGAAGCCACCCT
CTGGAGCGCTAGATTTGACCACATCTGTTTTGAGGACTCATTATGAACAAAGAAGTCCCT
CAGGTGTGAAGTTTTTCAACATGAGTGGCCTTGGGGACAGTTCATCTGACCCTGCTAACC
CAGACTCACATAAGAGAAAAGGATCACCATGTGACACATTGGCATCAAGCACTGAAAAAA
GGCGCAGGGAACAAGAAAATAAATATTTAGAAGAGCTAGCTGAGTTACTGTCTGCCAACA
TCAGTGACATTGACAGCTTGAGTGTAAAACCAGACAAATGCAAGATATTAAAGAAGACAG
TCGATCAGATACAGCTAATGAAGAGAATGGAACAAGAGAAATCAACAACTGATGATGAAG
TACAGAAATCAGATATCTCGTCGAGTAGTCAAGGGGTGATAGAAAAAGAATCCTTGGGAC
CTCTTCTTTTGGAGGTAGCTGTTCTCATTGTCTCAGAAAAAGTGATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61811213|ref|XP_603182.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61811213|ref|XP_603182.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               267-386, - strand, RNAz p=0.90372

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-386, - strand, RNAz p=0.90372

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               11-130, gnl|bosTau2|chr11 (53183381-53183500)
               

               
               11-130, gnl|canFam2|chr17 (21996911-21997153)
               

               
               11-130, gnl|dasNov1|scaffold_30960 (13960-14218)
               

               
               11-130, gnl|echTel1|scaffold_175124 (2057-2296)
               

               
               11-130, gnl|hg17|chr2 (24778428-24778678)
               

               
               11-130, gnl|Hg17|chr2 (24778530-24778649)
               

               
               11-130, gnl|mm7|chr12 (4280608-4280380)
               

               
               11-130, gnl|Mm7|chr12 (4280507-4280396)
               

               
               11-130, gnl|panTro1|chr12 (25655812-25656062)
               

               
               11-130, gnl|rheMac2|chr13 (24557988-24558238)
               

               
               11-130, gnl|rn3|chr6 (27336845-27336606)
               


               
               228-396, gnl|bosTau2|chr11 (53199371-53199539)
               

               
               228-396, gnl|Hg17|chr2 (24800267-24800435)
               

               
               228-396, gnl|Mm7|chr12 (4265025-4264857)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-130, gnl|bosTau2|chr11 (53183381-53183500)
               

               
               11-130, gnl|canFam2|chr17 (21996911-21997153)
               

               
               11-130, gnl|dasNov1|scaffold_30960 (13960-14218)
               

               
               11-130, gnl|echTel1|scaffold_175124 (2057-2296)
               

               
               11-130, gnl|hg17|chr2 (24778428-24778678)
               

               
               11-130, gnl|Hg17|chr2 (24778530-24778649)
               

               
               11-130, gnl|mm7|chr12 (4280608-4280380)
               

               
               11-130, gnl|Mm7|chr12 (4280507-4280396)
               

               
               11-130, gnl|panTro1|chr12 (25655812-25656062)
               

               
               11-130, gnl|rheMac2|chr13 (24557988-24558238)
               

               
               11-130, gnl|rn3|chr6 (27336845-27336606)
               


               
               228-396, gnl|bosTau2|chr11 (53199371-53199539)
               

               
               228-396, gnl|Hg17|chr2 (24800267-24800435)
               

               
               228-396, gnl|Mm7|chr12 (4265025-4264857)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	11-130, gnl\|bosTau2\|chr11 (53183381-53183500)
	11-130, gnl\|canFam2\|chr17 (21996911-21997153)
	11-130, gnl\|dasNov1\|scaffold_30960 (13960-14218)
	11-130, gnl\|echTel1\|scaffold_175124 (2057-2296)
	11-130, gnl\|hg17\|chr2 (24778428-24778678)
	11-130, gnl\|Hg17\|chr2 (24778530-24778649)
	11-130, gnl\|mm7\|chr12 (4280608-4280380)
	11-130, gnl\|Mm7\|chr12 (4280507-4280396)
	11-130, gnl\|panTro1\|chr12 (25655812-25656062)
	11-130, gnl\|rheMac2\|chr13 (24557988-24558238)
	11-130, gnl\|rn3\|chr6 (27336845-27336606)

	228-396, gnl\|bosTau2\|chr11 (53199371-53199539)
	228-396, gnl\|Hg17\|chr2 (24800267-24800435)
	228-396, gnl\|Mm7\|chr12 (4265025-4264857)