Non-Coding RNA Search

rspl36_d7.y1

Sequence:


               
               TTTTAAGCAGCGACACAGCATTAGAGAGATTAATATTAGAAATGAAAGATTAAGCGGAGA
TGAGACTGCTGTGGAAGATTTTTGTAACAACTTTCGAGACTTTATTGAACAAGAGAATTT
GCAACCAGAACAAATCTACAATGCAGATGAAACTGGATTGTTTTGGAAATGCCTGCCTTC
CAGAACTTCAGTAATCAAAGGTAAATGCACAGTCCCTGGGCACAAGTCAGTTGAAGAAAG
AGTCACTGTCATGTGTTGTGCCAATGCAACAGGTTTACACAAACTTAAACTTTGTGTTGT
AGGGAAAGCAAAGAAACCTCGCTCTTTCAAGTCAACTGACACTTCAAACCTGCCAGTCTC
TTATTTTAGCCAAAAAGGTGCATGGATGGATCTTTCAATTTTCCGACAATGGTTTGATAA
GATCTTTGTGCCACAAGTTCGGGAGCACTTAAGATCCAAAGGCTTACAGGAGAAGGCTGT
GCTCTTGTTGGATAATTCACCAACACATCCAAATGAAAACGTCCTGAGATCAGATGATGG
CCAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAGCAGCGACACAGCATTAGAGAGATTAATATTAGAAATGAAAGATTAAGCGGAGA
TGAGACTGCTGTGGAAGATTTTTGTAACAACTTTCGAGACTTTATTGAACAAGAGAATTT
GCAACCAGAACAAATCTACAATGCAGATGAAACTGGATTGTTTTGGAAATGCCTGCCTTC
CAGAACTTCAGTAATCAAAGGTAAATGCACAGTCCCTGGGCACAAGTCAGTTGAAGAAAG
AGTCACTGTCATGTGTTGTGCCAATGCAACAGGTTTACACAAACTTAAACTTTGTGTTGT
AGGGAAAGCAAAGAAACCTCGCTCTTTCAAGTCAACTGACACTTCAAACCTGCCAGTCTC
TTATTTTAGCCAAAAAGGTGCATGGATGGATCTTTCAATTTTCCGACAATGGTTTGATAA
GATCTTTGTGCCACAAGTTCGGGAGCACTTAAGATCCAAAGGCTTACAGGAGAAGGCTGT
GCTCTTGTTGGATAATTCACCAACACATCCAAATGAAAACGTCCTGAGATCAGATGATGG
CCAAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46189231|gb|AAH68272.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46189231|gb|AAH68272.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, + strand, RNAz p=0.74112

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, + strand, RNAz p=0.74112

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-547, gnl|bosTau2|chr11 (28034090-28034636)
               

               
               1-547, gnl|Hg17|chr11 (95763845-95764391)
               

               
               1-547, gnl|Mm7|chrUn_random (11374442-11373896)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-547, gnl|bosTau2|chr11 (28034090-28034636)
               

               
               1-547, gnl|Hg17|chr11 (95763845-95764391)
               

               
               1-547, gnl|Mm7|chrUn_random (11374442-11373896)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-547, gnl\|bosTau2\|chr11 (28034090-28034636)
	1-547, gnl\|Hg17\|chr11 (95763845-95764391)
	1-547, gnl\|Mm7\|chrUn_random (11374442-11373896)