Non-Coding RNA Search

rspl36_p13.y1

Sequence:


               
               TAAAACACAAAAAAAACAAAAAGACAACCCCACTGGGGTTGAGAAGGTATTAGTGCTCAT
ATCCTCTGTTTACAGCTAATAAAACAGGATCAGCTCGGAAGGGACAAGGACAGAATTTGA
GCTCAGGTCTAATTACCACCATGTGAAACTTTCAGAGTAGCTATATTGAGTAGATTCACT
CACTTAACAAAATTGGAGTGGTAACTATGTGCCACACATACTCTGGGTAAATTAGCTCCT
GTTGATACAATGATGAGCAAGAAGGAAAAGGTTCCTGCCCTCATGGAGCTACAGTCTAAT
GGAAAAAAGAAAAGAAACAAGTCAACAGATAATATAAAGGACACGAACAGGGGGCTCAAT
GAAAGAATTAAGGGAGTGAAAATGACCTAATTTTAGAGTGACTGGGAAAGGTCTCTCTGA
GGAGGTGAGATTAAAGCTGAGAGCTCAAGGTTAAAGCAGATAAGCATGCAAAAAATAGTG
GAGGGATGCCAAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACACAAAAAAAACAAAAAGACAACCCCACTGGGGTTGAGAAGGTATTAGTGCTCAT
ATCCTCTGTTTACAGCTAATAAAACAGGATCAGCTCGGAAGGGACAAGGACAGAATTTGA
GCTCAGGTCTAATTACCACCATGTGAAACTTTCAGAGTAGCTATATTGAGTAGATTCACT
CACTTAACAAAATTGGAGTGGTAACTATGTGCCACACATACTCTGGGTAAATTAGCTCCT
GTTGATACAATGATGAGCAAGAAGGAAAAGGTTCCTGCCCTCATGGAGCTACAGTCTAAT
GGAAAAAAGAAAAGAAACAAGTCAACAGATAATATAAAGGACACGAACAGGGGGCTCAAT
GAAAGAATTAAGGGAGTGAAAATGACCTAATTTTAGAGTGACTGGGAAAGGTCTCTCTGA
GGAGGTGAGATTAAAGCTGAGAGCTCAAGGTTAAAGCAGATAAGCATGCAAAAAATAGTG
GAGGGATGCCAAGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               345-494, - strand, RNAz p=0.994826

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               345-494, - strand, RNAz p=0.994826

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               129-494, gnl|bosTau2|chr3 (16592445-16592821)
               

               
               129-494, gnl|Hg17|chr1 (147741374-147741049)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-494, gnl|bosTau2|chr3 (16592445-16592821)
               

               
               129-494, gnl|Hg17|chr1 (147741374-147741049)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	129-494, gnl\|bosTau2\|chr3 (16592445-16592821)
	129-494, gnl\|Hg17\|chr1 (147741374-147741049)