Non-Coding RNA Search

rspl38_a18.y1

Sequence:


               
               ATTTGAAATGGCCAACTCACCTGATGCAGTCGTCTCTTCTCCATCAGCTTTCTTAAGGTC
TGGCTCAGTTTATGAACCTCTTAAAAGCATTAATCTTCCAAGACCTGATAATGAAACTCT
GTGGGAAAAGTTGGATCACTATTACAGAATTGTCAAGTCAACATTGCTGCTGTATCAAAG
TCCAACCACAGGTCTCTTTCCCACTAAAACATGTGGTGATGATCAGAAAGCTAAGGTCCA
TGACAGTCTATACTGCGCTGCTGGCGCCTGGGCTTTGGCTCTTGCATACAGGCGCATTGA
TGATGACAAGGGAAGGACCCATGAGCTGGAGCACTCGGCTATAAAATGCATGAGAGGAAT
TCTCTACTGCTATATGCGTCAGGCCGATAAGGTCCAGCAGTTTAAGCAGGATCCACGCCC
GACCACATGTCTTCACTCTGTTTTCAGTGTGCACACAGGAGATGAGATCCTCTCCTATGA
GGAATATGGTCATCTTCAGATAAATACAGTGTCACTCTATCTCCTTTACCTTGTGGAAAT
GATTTCCTCAGGACTCCAGATTATCTATAACACTGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGAAATGGCCAACTCACCTGATGCAGTCGTCTCTTCTCCATCAGCTTTCTTAAGGTC
TGGCTCAGTTTATGAACCTCTTAAAAGCATTAATCTTCCAAGACCTGATAATGAAACTCT
GTGGGAAAAGTTGGATCACTATTACAGAATTGTCAAGTCAACATTGCTGCTGTATCAAAG
TCCAACCACAGGTCTCTTTCCCACTAAAACATGTGGTGATGATCAGAAAGCTAAGGTCCA
TGACAGTCTATACTGCGCTGCTGGCGCCTGGGCTTTGGCTCTTGCATACAGGCGCATTGA
TGATGACAAGGGAAGGACCCATGAGCTGGAGCACTCGGCTATAAAATGCATGAGAGGAAT
TCTCTACTGCTATATGCGTCAGGCCGATAAGGTCCAGCAGTTTAAGCAGGATCCACGCCC
GACCACATGTCTTCACTCTGTTTTCAGTGTGCACACAGGAGATGAGATCCTCTCCTATGA
GGAATATGGTCATCTTCAGATAAATACAGTGTCACTCTATCTCCTTTACCTTGTGGAAAT
GATTTCCTCAGGACTCCAGATTATCTATAACACTGATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57043124|ref|XP_535316.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57043124|ref|XP_535316.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               281-559, - strand, RNAz p=0.948814

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-559, - strand, RNAz p=0.948814

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-579, gnl|bosTau2|chr15 (877711-877145)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-579, gnl|bosTau2|chr15 (877711-877145)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)