Non-Coding RNA Search

rspl39_n13.y1

Sequence:


               
               GATGATGGCCCATTGCCTTCTGACAGTGTGATCTCTGATTTCATTTTAGGTGACTGTGTT
TACCAAATGCAGCCTGAATTACAGTGGAATTTCACAGCAGGAGATATGTTTCCTGTTGGA
TTTAATCTTGCACTTTCCCATATCATAATGTAGGGAATTATTTCGACATGACACTTTTAA
TAGGGCCATCACATTTGTAGATATACTTTACTTCCTAATTTTCACCATTTCAACATCCTT
TACTTTGTCTTGGTGTGTTTTCCCCACTCCGTTAAGATTATTTCCTCCTCATTCAAATAA
ATCTAGTCTGTTATGTCTGTGATCTTTTGTTTTCTATATAGAATAGCTTCTGATCTTTTG
TTTTCTCTATAGAATGGATGCAAATATAAATTTTCCTAAATCCAAGTTTATTCAGTATAA
ATAGGTACAAGGATCTGAGTACATTTTTATATATTCTGGTATGATTGGATCTGGAGCATA
TTAAATATATTAATAATATATTATAAATATCTGTTTCTATATTTCTCTTTATGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGATGGCCCATTGCCTTCTGACAGTGTGATCTCTGATTTCATTTTAGGTGACTGTGTT
TACCAAATGCAGCCTGAATTACAGTGGAATTTCACAGCAGGAGATATGTTTCCTGTTGGA
TTTAATCTTGCACTTTCCCATATCATAATGTAGGGAATTATTTCGACATGACACTTTTAA
TAGGGCCATCACATTTGTAGATATACTTTACTTCCTAATTTTCACCATTTCAACATCCTT
TACTTTGTCTTGGTGTGTTTTCCCCACTCCGTTAAGATTATTTCCTCCTCATTCAAATAA
ATCTAGTCTGTTATGTCTGTGATCTTTTGTTTTCTATATAGAATAGCTTCTGATCTTTTG
TTTTCTCTATAGAATGGATGCAAATATAAATTTTCCTAAATCCAAGTTTATTCAGTATAA
ATAGGTACAAGGATCTGAGTACATTTTTATATATTCTGGTATGATTGGATCTGGAGCATA
TTAAATATATTAATAATATATTATAAATATCTGTTTCTATATTTCTCTTTATGTGTGT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               21-362, gnl|bosTau2|chr16 (52862818-52863179)
               

               
               21-362, gnl|canFam2|chr7 (13860124-13860554)
               

               
               21-362, gnl|dasNov1|scaffold_18132 (42761-43230)
               

               
               21-362, gnl|echTel1|scaffold_252532 (4339-3917)
               

               
               21-362, gnl|hg17|chr1 (209304003-209304443)
               

               
               21-362, gnl|Hg17|chr1 (209304374-209304006)
               

               
               21-362, gnl|loxAfr1|scaffold_21941 (31094-31555)
               

               
               21-362, gnl|oryCun1|scaffold_214993 (84746-85204)
               

               
               21-362, gnl|panTro1|chr1 (192947638-192948078)
               

               
               21-362, gnl|rheMac2|chr1 (157674023-157673584)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-362, gnl|bosTau2|chr16 (52862818-52863179)
               

               
               21-362, gnl|canFam2|chr7 (13860124-13860554)
               

               
               21-362, gnl|dasNov1|scaffold_18132 (42761-43230)
               

               
               21-362, gnl|echTel1|scaffold_252532 (4339-3917)
               

               
               21-362, gnl|hg17|chr1 (209304003-209304443)
               

               
               21-362, gnl|Hg17|chr1 (209304374-209304006)
               

               
               21-362, gnl|loxAfr1|scaffold_21941 (31094-31555)
               

               
               21-362, gnl|oryCun1|scaffold_214993 (84746-85204)
               

               
               21-362, gnl|panTro1|chr1 (192947638-192948078)
               

               
               21-362, gnl|rheMac2|chr1 (157674023-157673584)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	21-362, gnl\|bosTau2\|chr16 (52862818-52863179)
	21-362, gnl\|canFam2\|chr7 (13860124-13860554)
	21-362, gnl\|dasNov1\|scaffold_18132 (42761-43230)
	21-362, gnl\|echTel1\|scaffold_252532 (4339-3917)
	21-362, gnl\|hg17\|chr1 (209304003-209304443)
	21-362, gnl\|Hg17\|chr1 (209304374-209304006)
	21-362, gnl\|loxAfr1\|scaffold_21941 (31094-31555)
	21-362, gnl\|oryCun1\|scaffold_214993 (84746-85204)
	21-362, gnl\|panTro1\|chr1 (192947638-192948078)
	21-362, gnl\|rheMac2\|chr1 (157674023-157673584)