Non-Coding RNA Search

rssp05_e7.y1

Sequence:


               
               ATCAGCCATGATGAGATGTTTTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGCTG
TGTCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTAACATTGATGACTCGCTC
ATTGGTGGAAATGCCTCCGCTGAAGGGCCCGAGGGCGAAGGTACCGAAAGCACAGTAATC
ACTGGTGTCGATATTGTCATGAACCATCACCTGCAGGAAACCAGCTTCACAAAGGAAGCC
TACAAGAAGTACATCAAAGATTATATGAAGTCAATCAAAGGGAAACTCGAAGAACAGAGA
CCAGAAAGAGTAAAACCTTTTATGACAGGAGCTGCAGAACAAATCAAGCACATCCTTGCT
AATTTCAAAAACTATCAGTTCTTTATTGGTGAAAACATGAATCCAGACGGCATGGTTGCT
CTGCTGGACTACCGTGAGGATGGTGTGACTCCATATATGATTTTCTTTAAGGATGGCTTA
GAAATGGAAAAATGTTAACAAATTTGGCTGTTGGGATCGGATCTATCACCCGTTGTCATA
ACTGGCTGGCCACTGCTTTCCATCCACAAAACACCAGGACTTAGACAAGTGGGACTGATG
GCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGCCATGATGAGATGTTTTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGCTG
TGTCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAGAGGGTAACATTGATGACTCGCTC
ATTGGTGGAAATGCCTCCGCTGAAGGGCCCGAGGGCGAAGGTACCGAAAGCACAGTAATC
ACTGGTGTCGATATTGTCATGAACCATCACCTGCAGGAAACCAGCTTCACAAAGGAAGCC
TACAAGAAGTACATCAAAGATTATATGAAGTCAATCAAAGGGAAACTCGAAGAACAGAGA
CCAGAAAGAGTAAAACCTTTTATGACAGGAGCTGCAGAACAAATCAAGCACATCCTTGCT
AATTTCAAAAACTATCAGTTCTTTATTGGTGAAAACATGAATCCAGACGGCATGGTTGCT
CTGCTGGACTACCGTGAGGATGGTGTGACTCCATATATGATTTTCTTTAAGGATGGCTTA
GAAATGGAAAAATGTTAACAAATTTGGCTGTTGGGATCGGATCTATCACCCGTTGTCATA
ACTGGCTGGCCACTGCTTTCCATCCACAAAACACCAGGACTTAGACAAGTGGGACTGATG
GCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18490879|gb|AAH22436.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18490879|gb|AAH22436.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-604, gnl|bosTau2|chr18 (925816-925214)
               

               
               1-604, gnl|Hg17|chr9 (117925193-117924594)
               

               
               1-604, gnl|Mm7|chr6 (99966387-99965801)
               


               
               2-603, gnl|bosTau2|chr14 (36158294-36157725)
               

               
               2-603, gnl|Hg17|chr6 (144563773-144563176)
               

               
               2-603, gnl|Mm7|chr6 (99966386-99965802)
               


               
               174-565, gnl|bosTau2|chr10 (45753393-45753003)
               

               
               174-565, gnl|Mm7|chr6 (99966214-99965841)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-604, gnl|bosTau2|chr18 (925816-925214)
               

               
               1-604, gnl|Hg17|chr9 (117925193-117924594)
               

               
               1-604, gnl|Mm7|chr6 (99966387-99965801)
               


               
               2-603, gnl|bosTau2|chr14 (36158294-36157725)
               

               
               2-603, gnl|Hg17|chr6 (144563773-144563176)
               

               
               2-603, gnl|Mm7|chr6 (99966386-99965802)
               


               
               174-565, gnl|bosTau2|chr10 (45753393-45753003)
               

               
               174-565, gnl|Mm7|chr6 (99966214-99965841)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	1-604, gnl\|bosTau2\|chr18 (925816-925214)
	1-604, gnl\|Hg17\|chr9 (117925193-117924594)
	1-604, gnl\|Mm7\|chr6 (99966387-99965801)

	2-603, gnl\|bosTau2\|chr14 (36158294-36157725)
	2-603, gnl\|Hg17\|chr6 (144563773-144563176)
	2-603, gnl\|Mm7\|chr6 (99966386-99965802)

	174-565, gnl\|bosTau2\|chr10 (45753393-45753003)
	174-565, gnl\|Mm7\|chr6 (99966214-99965841)