Non-Coding RNA Search

rssp06_k5.y1

Sequence:


               
               GGAGATAATGTGAGAAGAGTGTGTATGTATGTATGACTGGGTCACTCTGCTGAACAGCTG
AAATTGATAGAACATTGTAAATCAACTATAATAAAAAATTTTTTAATATAAATTTAGAAC
TCTGGCATCATTAAAAAAAATTGCAAGATGATGTGACTTCACAATGTCAAGAATATTTGT
TTATTGTTAACCCTATATAAGTTAACCCAACAGTATAGATGTTTAGAAGAAAAGCATATA
GTGGTTTTATTAGGAGAGGCATGGCAAGTAGCACAATGGAGGAGATGGAGGCTCTTTGTT
CTGTATTACCCAGCTCAGAGCTAAAGTATTATCTTTGTGGGCCCCCCAGTGTGAGGAGGA
CACAGATACATTGGTGTGTGTCTGGCAGTGGTGACCAGGATGAGGCGAGCCCTAGAAACT
TTGGTGTGGGAAATAGCTGAGGGGCTGGAAGGAGGTGTTGAGAAGGAGAGGTGCAGATAA
ATGGAAAGCCAGTATTCTGGCATTTGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGATAATGTGAGAAGAGTGTGTATGTATGTATGACTGGGTCACTCTGCTGAACAGCTG
AAATTGATAGAACATTGTAAATCAACTATAATAAAAAATTTTTTAATATAAATTTAGAAC
TCTGGCATCATTAAAAAAAATTGCAAGATGATGTGACTTCACAATGTCAAGAATATTTGT
TTATTGTTAACCCTATATAAGTTAACCCAACAGTATAGATGTTTAGAAGAAAAGCATATA
GTGGTTTTATTAGGAGAGGCATGGCAAGTAGCACAATGGAGGAGATGGAGGCTCTTTGTT
CTGTATTACCCAGCTCAGAGCTAAAGTATTATCTTTGTGGGCCCCCCAGTGTGAGGAGGA
CACAGATACATTGGTGTGTGTCTGGCAGTGGTGACCAGGATGAGGCGAGCCCTAGAAACT
TTGGTGTGGGAAATAGCTGAGGGGCTGGAAGGAGGTGTTGAGAAGGAGAGGTGCAGATAA
ATGGAAAGCCAGTATTCTGGCATTTGAAGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-113, gnl|bosTau2|chr26 (28423400-28423513)
               


               
               135-475, gnl|bosTau2|chr8 (30027867-30027528)
               

               
               135-475, gnl|Hg17|chr9 (37471441-37471746)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-113, gnl|bosTau2|chr26 (28423400-28423513)
               


               
               135-475, gnl|bosTau2|chr8 (30027867-30027528)
               

               
               135-475, gnl|Hg17|chr9 (37471441-37471746)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	1-113, gnl\|bosTau2\|chr26 (28423400-28423513)

	135-475, gnl\|bosTau2\|chr8 (30027867-30027528)
	135-475, gnl\|Hg17\|chr9 (37471441-37471746)