Non-Coding RNA Search

rssp13_c23.y1

Sequence:


               
               AAAGAAGAAAGTTCCCGAAGAAAAAAGACCAGTTCCTCGGAAAGAGGAAGAAGTTCCACC
ACCAAAAGTGCCAGCTCCACCTAAGAAACCTGTCCCAGAGGAGAAAGTTCCCGTGCCAGT
TCCTGTCACTAAGAAAGCCCCTCCTCCTCGAGCTGAAGTTTCTAAGAAAACTGTCATAGA
AGAAAAAAGACTTGTTGCTGAAGAAAAACTCTCCGTTGCAGTTCCTCAGAGAGTGGAAGT
CATGCGGCATGAAGAGAAGGAATGGAGTTATTCAGAAGAAGAGGAAAGAGTATCTGTTTC
AGTTTATAGAGAAGAGGAAAGAGAGGAGGAGGAGGAAGTGGAGGTTACAGAATATGAAGT
GATGGAAGAGCCTGAGGAATATATTGTAGAGGAAGAGGTGCACTTAATCTCTGAGAGAGT
GGAAGCTGAACCAGCTGAAGTGCCTGAGAAGAAAATGGTACCGAAACCAAAAGTTCCTGT
TAAAATAGAAGAGCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAAGAAAGTTCCCGAAGAAAAAAGACCAGTTCCTCGGAAAGAGGAAGAAGTTCCACC
ACCAAAAGTGCCAGCTCCACCTAAGAAACCTGTCCCAGAGGAGAAAGTTCCCGTGCCAGT
TCCTGTCACTAAGAAAGCCCCTCCTCCTCGAGCTGAAGTTTCTAAGAAAACTGTCATAGA
AGAAAAAAGACTTGTTGCTGAAGAAAAACTCTCCGTTGCAGTTCCTCAGAGAGTGGAAGT
CATGCGGCATGAAGAGAAGGAATGGAGTTATTCAGAAGAAGAGGAAAGAGTATCTGTTTC
AGTTTATAGAGAAGAGGAAAGAGAGGAGGAGGAGGAAGTGGAGGTTACAGAATATGAAGT
GATGGAAGAGCCTGAGGAATATATTGTAGAGGAAGAGGTGCACTTAATCTCTGAGAGAGT
GGAAGCTGAACCAGCTGAAGTGCCTGAGAAGAAAATGGTACCGAAACCAAAAGTTCCTGT
TAAAATAGAAGAGCCTCC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               250-359, gnl|bosTau2|chr2 (7723702-7723808)
               

               
               250-359, gnl|canFam2|chr36 (25324252-25324768)
               

               
               250-359, gnl|hg17|chr2 (179378220-179378754)
               

               
               250-359, gnl|Hg17|chr2 (179378453-179378344)
               

               
               250-359, gnl|loxAfr1|scaffold_83376 (601-106)
               

               
               250-359, gnl|mm7|chr2 (76699895-76700372)
               

               
               250-359, gnl|Mm7|chr2 (76700087-76699981)
               

               
               250-359, gnl|oryCun1|scaffold_206234 (366573-366097)
               

               
               250-359, gnl|panTro1|chr13 (69164077-69164611)
               

               
               250-359, gnl|rheMac2|chr12 (42330386-42330910)
               

               
               250-359, gnl|rn3|chr3 (59441214-59441691)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               250-359, gnl|bosTau2|chr2 (7723702-7723808)
               

               
               250-359, gnl|canFam2|chr36 (25324252-25324768)
               

               
               250-359, gnl|hg17|chr2 (179378220-179378754)
               

               
               250-359, gnl|Hg17|chr2 (179378453-179378344)
               

               
               250-359, gnl|loxAfr1|scaffold_83376 (601-106)
               

               
               250-359, gnl|mm7|chr2 (76699895-76700372)
               

               
               250-359, gnl|Mm7|chr2 (76700087-76699981)
               

               
               250-359, gnl|oryCun1|scaffold_206234 (366573-366097)
               

               
               250-359, gnl|panTro1|chr13 (69164077-69164611)
               

               
               250-359, gnl|rheMac2|chr12 (42330386-42330910)
               

               
               250-359, gnl|rn3|chr3 (59441214-59441691)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	250-359, gnl\|bosTau2\|chr2 (7723702-7723808)
	250-359, gnl\|canFam2\|chr36 (25324252-25324768)
	250-359, gnl\|hg17\|chr2 (179378220-179378754)
	250-359, gnl\|Hg17\|chr2 (179378453-179378344)
	250-359, gnl\|loxAfr1\|scaffold_83376 (601-106)
	250-359, gnl\|mm7\|chr2 (76699895-76700372)
	250-359, gnl\|Mm7\|chr2 (76700087-76699981)
	250-359, gnl\|oryCun1\|scaffold_206234 (366573-366097)
	250-359, gnl\|panTro1\|chr13 (69164077-69164611)
	250-359, gnl\|rheMac2\|chr12 (42330386-42330910)
	250-359, gnl\|rn3\|chr3 (59441214-59441691)