Non-Coding RNA Search

rssp21_b15.y1

Sequence:


               
               ACAGGTCCCCTCTAAATGACACTCACCCTTCTTGAAAGTCCGACTCGCTTTGCAGGGCTC
CTCAGAAACAGCTGGGATGCAGGGTCAGGGTAAATCTATTCCGTGGTGCTTAAAGGATCT
TGCCAGCTACCTTTTCAGTCCAAAAAGAAAAGACCTTTGAGAGGGGCGATCGGATATCTC
TGTGCAGGACACAGAGACTCCATTGACTGCGAGACAAAGGCCCTGGCTTGTCAAGAGAGC
ACTCGAGAGCATGGAGCTGGGGGAATTTAATTGGATACTTCATGCTTATTTTGCCCAGCA
AAACAGATCTGATTCTCTCTACAATAATAGTTGTTTTAGGGTTTTTTTTTTTTATTCTTA
GTCTATTTATTTATTTATTTATTTATTTATTTATTTGTGTCTTTTTGCCTTTTCCATATG
CCGCGGGAGCAGCCCAAAAAAAGGCAAAAAAATATATGTATGTAGATTCCAGTATTTCCC
AGTGGTGCAGCAGGTTAAGGATCTGGCATTGTTACTGCTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGTCCCCTCTAAATGACACTCACCCTTCTTGAAAGTCCGACTCGCTTTGCAGGGCTC
CTCAGAAACAGCTGGGATGCAGGGTCAGGGTAAATCTATTCCGTGGTGCTTAAAGGATCT
TGCCAGCTACCTTTTCAGTCCAAAAAGAAAAGACCTTTGAGAGGGGCGATCGGATATCTC
TGTGCAGGACACAGAGACTCCATTGACTGCGAGACAAAGGCCCTGGCTTGTCAAGAGAGC
ACTCGAGAGCATGGAGCTGGGGGAATTTAATTGGATACTTCATGCTTATTTTGCCCAGCA
AAACAGATCTGATTCTCTCTACAATAATAGTTGTTTTAGGGTTTTTTTTTTTTATTCTTA
GTCTATTTATTTATTTATTTATTTATTTATTTATTTGTGTCTTTTTGCCTTTTCCATATG
CCGCGGGAGCAGCCCAAAAAAAGGCAAAAAAATATATGTATGTAGATTCCAGTATTTCCC
AGTGGTGCAGCAGGTTAAGGATCTGGCATTGTTACTGCTGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               98-292, - strand, RNAz p=0.962098

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-292, - strand, RNAz p=0.962098

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               20-359, gnl|bosTau2|chr23 (1488602-1488261)
               

               
               20-359, gnl|canFam2|chr12 (26790731-26791219)
               

               
               20-359, gnl|dasNov1|scaffold_61 (112387-112895)
               

               
               20-359, gnl|echTel1|scaffold_309957 (137588-137008)
               

               
               20-359, gnl|hg17|chr6 (56508245-56508735)
               

               
               20-359, gnl|Hg17|chr6 (56508774-56508438)
               

               
               20-359, gnl|loxAfr1|scaffold_217 (157615-158209)
               

               
               20-359, gnl|monDom2|scaffold_0 (178929755-178929270)
               

               
               20-359, gnl|oryCun1|scaffold_208118 (148672-149202)
               

               
               20-359, gnl|panTro1|chr5 (57800138-57800628)
               

               
               20-359, gnl|rheMac2|chr4 (56175511-56176003)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-359, gnl|bosTau2|chr23 (1488602-1488261)
               

               
               20-359, gnl|canFam2|chr12 (26790731-26791219)
               

               
               20-359, gnl|dasNov1|scaffold_61 (112387-112895)
               

               
               20-359, gnl|echTel1|scaffold_309957 (137588-137008)
               

               
               20-359, gnl|hg17|chr6 (56508245-56508735)
               

               
               20-359, gnl|Hg17|chr6 (56508774-56508438)
               

               
               20-359, gnl|loxAfr1|scaffold_217 (157615-158209)
               

               
               20-359, gnl|monDom2|scaffold_0 (178929755-178929270)
               

               
               20-359, gnl|oryCun1|scaffold_208118 (148672-149202)
               

               
               20-359, gnl|panTro1|chr5 (57800138-57800628)
               

               
               20-359, gnl|rheMac2|chr4 (56175511-56176003)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	20-359, gnl\|bosTau2\|chr23 (1488602-1488261)
	20-359, gnl\|canFam2\|chr12 (26790731-26791219)
	20-359, gnl\|dasNov1\|scaffold_61 (112387-112895)
	20-359, gnl\|echTel1\|scaffold_309957 (137588-137008)
	20-359, gnl\|hg17\|chr6 (56508245-56508735)
	20-359, gnl\|Hg17\|chr6 (56508774-56508438)
	20-359, gnl\|loxAfr1\|scaffold_217 (157615-158209)
	20-359, gnl\|monDom2\|scaffold_0 (178929755-178929270)
	20-359, gnl\|oryCun1\|scaffold_208118 (148672-149202)
	20-359, gnl\|panTro1\|chr5 (57800138-57800628)
	20-359, gnl\|rheMac2\|chr4 (56175511-56176003)