Non-Coding RNA Search

rssp29_c3.y1

Sequence:


               
               ggttcttagtcggattcgttaaccactgagccaggacaggaactccCTCAGGATATTTAA
AAACATGAACTCTGTCTCTGGTAGACATAGCACAACTTAAATTTTCTGTTTCTTTGTTAA
TTTTAACAGTGGAGAGTGAAGTGTGCTATTTTTTGTTTTACTCTGCATAGAGTATAAACC
CTTTTCTCTGTTTAGGGTGAAGGGCTGATAAATCATATTCTCCCTAGAATTTAGTTGAGC
TGGTTCTGGGCTGCAGTGTTAGATTCAATCCATTTGGTATTGACTCAGCTTTCCAAAATG
TTTCCTTTTCTTATGACAGTTTTTTGGCTGTGAGGGATTTGGGTGTAGTATAAGGATACT
ATTGGCTTACCTTTAGGTCCTGGAATTTATTAACTAGGGCAGTGCTTAGAATTAACATCT
TCTCCCTCATGACTTTCTCTGAAAACTTGGAGGGGGTGTTTTGCGTATGGAGTAGTGTGG
GAGAATTGCTGGCCCAAGCAATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ggttcttagtcggattcgttaaccactgagccaggacaggaactccCTCAGGATATTTAA
AAACATGAACTCTGTCTCTGGTAGACATAGCACAACTTAAATTTTCTGTTTCTTTGTTAA
TTTTAACAGTGGAGAGTGAAGTGTGCTATTTTTTGTTTTACTCTGCATAGAGTATAAACC
CTTTTCTCTGTTTAGGGTGAAGGGCTGATAAATCATATTCTCCCTAGAATTTAGTTGAGC
TGGTTCTGGGCTGCAGTGTTAGATTCAATCCATTTGGTATTGACTCAGCTTTCCAAAATG
TTTCCTTTTCTTATGACAGTTTTTTGGCTGTGAGGGATTTGGGTGTAGTATAAGGATACT
ATTGGCTTACCTTTAGGTCCTGGAATTTATTAACTAGGGCAGTGCTTAGAATTAACATCT
TCTCCCTCATGACTTTCTCTGAAAACTTGGAGGGGGTGTTTTGCGTATGGAGTAGTGTGG
GAGAATTGCTGGCCCAAGCAATCTG

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               125-504, gnl|bosTau2|chr26 (210670-211059)
               

               
               125-504, gnl|canFam2|chr4 (13649308-13649758)
               

               
               125-504, gnl|hg17|chr10 (59669151-59669619)
               

               
               125-504, gnl|Hg17|chr10 (59669743-59669378)
               

               
               125-504, gnl|mm7|chr10 (70964707-70964354)
               

               
               125-504, gnl|panTro1|chr8 (60497153-60497621)
               

               
               125-504, gnl|rheMac2|chr9 (79077891-79077421)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-504, gnl|bosTau2|chr26 (210670-211059)
               

               
               125-504, gnl|canFam2|chr4 (13649308-13649758)
               

               
               125-504, gnl|hg17|chr10 (59669151-59669619)
               

               
               125-504, gnl|Hg17|chr10 (59669743-59669378)
               

               
               125-504, gnl|mm7|chr10 (70964707-70964354)
               

               
               125-504, gnl|panTro1|chr8 (60497153-60497621)
               

               
               125-504, gnl|rheMac2|chr9 (79077891-79077421)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	125-504, gnl\|bosTau2\|chr26 (210670-211059)
	125-504, gnl\|canFam2\|chr4 (13649308-13649758)
	125-504, gnl\|hg17\|chr10 (59669151-59669619)
	125-504, gnl\|Hg17\|chr10 (59669743-59669378)
	125-504, gnl\|mm7\|chr10 (70964707-70964354)
	125-504, gnl\|panTro1\|chr8 (60497153-60497621)
	125-504, gnl\|rheMac2\|chr9 (79077891-79077421)