Non-Coding RNA Search

rssp30_f22.y1

Sequence:


               
               TGGGCCGGCGGCATGCGGCACGGCTACGGCGTGCGCCAGAGCGTGCCCTATGGCATGGCC
ACGGTGATCCGCTCGCCGCTGCGCACGTCGCTGGCTTCGCTGCGCAGCGAGCAGAGCAAC
GGCAGCGTGCTCCACGACGCCGCGGCCGCCGCCGACAGCCCGGCCGGCACCCGCGGCGGC
TTCGTGCTCAACTTCCACGCCGACGCCGAGCTCGCCGGCAAGAAGAAGGGTGGCCTCTTC
CGCCGGGGCTCCCTCCTGGGAAGCATGAAGCTGCGCAAGTCCGAGTCCAAGTCCTCCATC
TCGAGCAAGCGCAGCTCGGTCCGCAGCGACGCGGCCATGAGCAGGATCAGCTCCAGCGAT
GCCAACTCCACGATCAGCTTCGGCGATGTAGATTGTGATTTTTGCCCGGTGGAGGACCAC
GTGGACGCCACCACCACGGAAACCTACATGGGCGAGTGGAAGAACGACAAGCGCACGGGC
TTCGGCATCAGCGAGCGCTCCAACGGCATGAAGTACGAAGGCGAGTGGGCGAATAACAAG
AGGCACGGGTACGGCTGCACGGTGTTTCCCGACGGCTCCAAGGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCCGGCGGCATGCGGCACGGCTACGGCGTGCGCCAGAGCGTGCCCTATGGCATGGCC
ACGGTGATCCGCTCGCCGCTGCGCACGTCGCTGGCTTCGCTGCGCAGCGAGCAGAGCAAC
GGCAGCGTGCTCCACGACGCCGCGGCCGCCGCCGACAGCCCGGCCGGCACCCGCGGCGGC
TTCGTGCTCAACTTCCACGCCGACGCCGAGCTCGCCGGCAAGAAGAAGGGTGGCCTCTTC
CGCCGGGGCTCCCTCCTGGGAAGCATGAAGCTGCGCAAGTCCGAGTCCAAGTCCTCCATC
TCGAGCAAGCGCAGCTCGGTCCGCAGCGACGCGGCCATGAGCAGGATCAGCTCCAGCGAT
GCCAACTCCACGATCAGCTTCGGCGATGTAGATTGTGATTTTTGCCCGGTGGAGGACCAC
GTGGACGCCACCACCACGGAAACCTACATGGGCGAGTGGAAGAACGACAAGCGCACGGGC
TTCGGCATCAGCGAGCGCTCCAACGGCATGAAGTACGAAGGCGAGTGGGCGAATAACAAG
AGGCACGGGTACGGCTGCACGGTGTTTCCCGACGGCTCCAAGGAAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874478|ref|XP_603897.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874478|ref|XP_603897.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.786583

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.786583

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-588, gnl|bosTau2|chr14 (21520595-21520008)
               

               
               1-588, gnl|canFam2|chr29 (25777737-25778114)
               

               
               1-588, gnl|danRer3|chr24 (11839643-11840027)
               

               
               1-588, gnl|dasNov1|scaffold_7690 (42619-42995)
               

               
               1-588, gnl|echTel1|scaffold_322800 (35791-36168)
               

               
               1-588, gnl|fr1|chrUn (258851753-258852137)
               

               
               1-588, gnl|galGal2|chr2 (117682125-117682502)
               

               
               1-588, gnl|hg17|chr8 (75389785-75390162)
               

               
               1-588, gnl|Hg17|chr8 (75390393-75389806)
               

               
               1-588, gnl|loxAfr1|scaffold_16219 (67850-67459)
               

               
               1-588, gnl|mm7|chr1 (17280661-17281038)
               

               
               1-588, gnl|Mm7|chr1 (17281269-17280682)
               

               
               1-588, gnl|monDom2|scaffold_4 (86117060-86116683)
               

               
               1-588, gnl|oryCun1|scaffold_199930 (97498-97121)
               

               
               1-588, gnl|panTro1|chr7 (77429981-77430358)
               

               
               1-588, gnl|rheMac2|chr8 (76808775-76809152)
               

               
               1-588, gnl|rn3|chr5 (1116981-1116604)
               

               
               1-588, gnl|tetNig1|chr6 (1898174-1897790)
               

               
               1-588, gnl|xenTro1|scaffold_245 (1389832-1390209)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr14 (21520595-21520008)
               

               
               1-588, gnl|canFam2|chr29 (25777737-25778114)
               

               
               1-588, gnl|danRer3|chr24 (11839643-11840027)
               

               
               1-588, gnl|dasNov1|scaffold_7690 (42619-42995)
               

               
               1-588, gnl|echTel1|scaffold_322800 (35791-36168)
               

               
               1-588, gnl|fr1|chrUn (258851753-258852137)
               

               
               1-588, gnl|galGal2|chr2 (117682125-117682502)
               

               
               1-588, gnl|hg17|chr8 (75389785-75390162)
               

               
               1-588, gnl|Hg17|chr8 (75390393-75389806)
               

               
               1-588, gnl|loxAfr1|scaffold_16219 (67850-67459)
               

               
               1-588, gnl|mm7|chr1 (17280661-17281038)
               

               
               1-588, gnl|Mm7|chr1 (17281269-17280682)
               

               
               1-588, gnl|monDom2|scaffold_4 (86117060-86116683)
               

               
               1-588, gnl|oryCun1|scaffold_199930 (97498-97121)
               

               
               1-588, gnl|panTro1|chr7 (77429981-77430358)
               

               
               1-588, gnl|rheMac2|chr8 (76808775-76809152)
               

               
               1-588, gnl|rn3|chr5 (1116981-1116604)
               

               
               1-588, gnl|tetNig1|chr6 (1898174-1897790)
               

               
               1-588, gnl|xenTro1|scaffold_245 (1389832-1390209)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	1-588, gnl\|bosTau2\|chr14 (21520595-21520008)
	1-588, gnl\|canFam2\|chr29 (25777737-25778114)
	1-588, gnl\|danRer3\|chr24 (11839643-11840027)
	1-588, gnl\|dasNov1\|scaffold_7690 (42619-42995)
	1-588, gnl\|echTel1\|scaffold_322800 (35791-36168)
	1-588, gnl\|fr1\|chrUn (258851753-258852137)
	1-588, gnl\|galGal2\|chr2 (117682125-117682502)
	1-588, gnl\|hg17\|chr8 (75389785-75390162)
	1-588, gnl\|Hg17\|chr8 (75390393-75389806)
	1-588, gnl\|loxAfr1\|scaffold_16219 (67850-67459)
	1-588, gnl\|mm7\|chr1 (17280661-17281038)
	1-588, gnl\|Mm7\|chr1 (17281269-17280682)
	1-588, gnl\|monDom2\|scaffold_4 (86117060-86116683)
	1-588, gnl\|oryCun1\|scaffold_199930 (97498-97121)
	1-588, gnl\|panTro1\|chr7 (77429981-77430358)
	1-588, gnl\|rheMac2\|chr8 (76808775-76809152)
	1-588, gnl\|rn3\|chr5 (1116981-1116604)
	1-588, gnl\|tetNig1\|chr6 (1898174-1897790)
	1-588, gnl\|xenTro1\|scaffold_245 (1389832-1390209)