Non-Coding RNA Search

rste03_n12.y1

Sequence:


               
               GAAGAACAGTCACAGAGTGAAAAGGTCAGGTTACATTGGCCTACCGCCATGCCATCTGGA
GATGCCTTTTCTTCTGTGGGGACTCATAGGTTGTCCAAAAGCCCTATAGTCGCTCTTCCT
CCATGTCTTCCATTGATCTAGTCAGTGCCTCTGACGATGTTCACAGATTCAGCTCCCAGG
TTGAAGAGATGGTGCAGAACCACATGACTTACTCATTACAGGATGTAGGCGGAGATGCCA
ATTGGCAGTTGGTTGTGGAAGAAGGAGAAATGAAGGTATATAGAAGAGAAGTAGAAGAAA
ATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAACAGTCACAGAGTGAAAAGGTCAGGTTACATTGGCCTACCGCCATGCCATCTGGA
GATGCCTTTTCTTCTGTGGGGACTCATAGGTTGTCCAAAAGCCCTATAGTCGCTCTTCCT
CCATGTCTTCCATTGATCTAGTCAGTGCCTCTGACGATGTTCACAGATTCAGCTCCCAGG
TTGAAGAGATGGTGCAGAACCACATGACTTACTCATTACAGGATGTAGGCGGAGATGCCA
ATTGGCAGTTGGTTGTGGAAGAAGGAGAAATGAAGGTATATAGAAGAGAAGTAGAAGAAA
ATGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61857544|ref|XP_617899.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857544|ref|XP_617899.1|

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               178-278, gnl|bosTau2|chr10 (1870214-1870314)
               

               
               178-278, gnl|canFam2|chr3 (33836050-33835944)
               

               
               178-278, gnl|danRer3|chr5 (57313110-57313002)
               

               
               178-278, gnl|fr1|chrUn (212666360-212666255)
               

               
               178-278, gnl|galGal2|chrZ (10130472-10130578)
               

               
               178-278, gnl|hg17|chr5 (74721170-74721276)
               

               
               178-278, gnl|Hg17|chr5 (74721270-74721170)
               

               
               178-278, gnl|mm7|chr13 (93694152-93694046)
               

               
               178-278, gnl|Mm7|chr13 (93694050-93694150)
               

               
               178-278, gnl|monDom2|scaffold_60 (9735677-9735783)
               

               
               178-278, gnl|oryCun1|scaffold_91742 (7117-7011)
               

               
               178-278, gnl|panTro1|chr4 (40702585-40702479)
               

               
               178-278, gnl|rheMac2|chr6 (71589548-71589654)
               

               
               178-278, gnl|rn3|chr2 (27024755-27024649)
               

               
               178-278, gnl|tetNig1|chrUn_random (1522894-1522999)
               

               
               178-278, gnl|xenTro1|scaffold_120 (2013804-2013910)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-278, gnl|bosTau2|chr10 (1870214-1870314)
               

               
               178-278, gnl|canFam2|chr3 (33836050-33835944)
               

               
               178-278, gnl|danRer3|chr5 (57313110-57313002)
               

               
               178-278, gnl|fr1|chrUn (212666360-212666255)
               

               
               178-278, gnl|galGal2|chrZ (10130472-10130578)
               

               
               178-278, gnl|hg17|chr5 (74721170-74721276)
               

               
               178-278, gnl|Hg17|chr5 (74721270-74721170)
               

               
               178-278, gnl|mm7|chr13 (93694152-93694046)
               

               
               178-278, gnl|Mm7|chr13 (93694050-93694150)
               

               
               178-278, gnl|monDom2|scaffold_60 (9735677-9735783)
               

               
               178-278, gnl|oryCun1|scaffold_91742 (7117-7011)
               

               
               178-278, gnl|panTro1|chr4 (40702585-40702479)
               

               
               178-278, gnl|rheMac2|chr6 (71589548-71589654)
               

               
               178-278, gnl|rn3|chr2 (27024755-27024649)
               

               
               178-278, gnl|tetNig1|chrUn_random (1522894-1522999)
               

               
               178-278, gnl|xenTro1|scaffold_120 (2013804-2013910)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	178-278, gnl\|bosTau2\|chr10 (1870214-1870314)
	178-278, gnl\|canFam2\|chr3 (33836050-33835944)
	178-278, gnl\|danRer3\|chr5 (57313110-57313002)
	178-278, gnl\|fr1\|chrUn (212666360-212666255)
	178-278, gnl\|galGal2\|chrZ (10130472-10130578)
	178-278, gnl\|hg17\|chr5 (74721170-74721276)
	178-278, gnl\|Hg17\|chr5 (74721270-74721170)
	178-278, gnl\|mm7\|chr13 (93694152-93694046)
	178-278, gnl\|Mm7\|chr13 (93694050-93694150)
	178-278, gnl\|monDom2\|scaffold_60 (9735677-9735783)
	178-278, gnl\|oryCun1\|scaffold_91742 (7117-7011)
	178-278, gnl\|panTro1\|chr4 (40702585-40702479)
	178-278, gnl\|rheMac2\|chr6 (71589548-71589654)
	178-278, gnl\|rn3\|chr2 (27024755-27024649)
	178-278, gnl\|tetNig1\|chrUn_random (1522894-1522999)
	178-278, gnl\|xenTro1\|scaffold_120 (2013804-2013910)