Non-Coding RNA Search

rste13_k2.y1

Sequence:


               
               TTTTTCTTTCCTGTTAAGGGGGTGGAGGTTAACTCTGCAGAAGATATCCAGGCCCAACCA
CCTCACTCCCTGAGGTAGCTTCTGACTAGGGGCAGAGAGTTTCCATCCTTATGAGCATGC
AGAGGCCCTACTGTTTGAGGGAACTGTTTAGAGGTTCTTATTCTTTTTCTGTAAGAACCT
ATCATTCCCACCAAGAAAAATACTGAATATAGCCAAGTCATTTTTGATGATGGGGTCTCT
GGAATAGAGTGTTAAAGGAAAGTTTGAGATAGGGAGAGAGAAGAGAAATGACTGGAAAGT
GGTGGGTAGCAAAAAGACATTTGTGTTTATTTACTTGGCATAGACCTTTTAGCATCCTAG
AGAAGGGAAGTAAGATTTGCGCTCTAggagttctcgttgtagctcaacaggtcaagaacc
tgactagtatccatgaggatgcgggtttagtccctggcctcgcttggtgggatagggatc
cagcgttgGCATAGGCCTCCAGCTGCAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCTTTCCTGTTAAGGGGGTGGAGGTTAACTCTGCAGAAGATATCCAGGCCCAACCA
CCTCACTCCCTGAGGTAGCTTCTGACTAGGGGCAGAGAGTTTCCATCCTTATGAGCATGC
AGAGGCCCTACTGTTTGAGGGAACTGTTTAGAGGTTCTTATTCTTTTTCTGTAAGAACCT
ATCATTCCCACCAAGAAAAATACTGAATATAGCCAAGTCATTTTTGATGATGGGGTCTCT
GGAATAGAGTGTTAAAGGAAAGTTTGAGATAGGGAGAGAGAAGAGAAATGACTGGAAAGT
GGTGGGTAGCAAAAAGACATTTGTGTTTATTTACTTGGCATAGACCTTTTAGCATCCTAG
AGAAGGGAAGTAAGATTTGCGCTCTAggagttctcgttgtagctcaacaggtcaagaacc
tgactagtatccatgaggatgcgggtttagtccctggcctcgcttggtgggatagggatc
cagcgttgGCATAGGCCTCCAGCTGCAGCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-110, + strand, RNAz p=0.646734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-110, + strand, RNAz p=0.646734

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-387, gnl|bosTau2|chr3 (16482573-16482178)
               

               
               1-387, gnl|Hg17|chr1 (147908100-147908505)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-387, gnl|bosTau2|chr3 (16482573-16482178)
               

               
               1-387, gnl|Hg17|chr1 (147908100-147908505)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	1-387, gnl\|bosTau2\|chr3 (16482573-16482178)
	1-387, gnl\|Hg17\|chr1 (147908100-147908505)