Non-Coding RNA Search

rste17_m22.y1

Sequence:


               
               TGATGATCTCTAAGATCCCTTTCAGTTCGGACAGGCTATGGAAAGAAAATGTGGGATGGA
AACAACGTGATGAGTTTCTGACAATTAACTAGTTTATGAGGTTCTGATGCCTGATTCTCT
GACTGCTTCACCCTAGTCCCCTAATGGTCCCACCCTCATATGTCGGCAGGGCCCCTCTTC
TTGGGTTGTCACTAAATTGTGACTGACTCATTTGGGGTCAGAGCATTTTAAAACCTCAGT
AATTATCAAAAATACAGCGTGTATAGGAAACACTTCATCTTTACTTAGTACTTGGACCCT
ATCTGGAAGTCCTGTGTGATGACTCTGTGAACATATATTTCAGAATATGACACATTAATT
CATGCATAACAATGCACGGTTTGAATTATGAACTTAGTCTTTCATGAAGTCAGAGATGCC
TCTGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGATCTCTAAGATCCCTTTCAGTTCGGACAGGCTATGGAAAGAAAATGTGGGATGGA
AACAACGTGATGAGTTTCTGACAATTAACTAGTTTATGAGGTTCTGATGCCTGATTCTCT
GACTGCTTCACCCTAGTCCCCTAATGGTCCCACCCTCATATGTCGGCAGGGCCCCTCTTC
TTGGGTTGTCACTAAATTGTGACTGACTCATTTGGGGTCAGAGCATTTTAAAACCTCAGT
AATTATCAAAAATACAGCGTGTATAGGAAACACTTCATCTTTACTTAGTACTTGGACCCT
ATCTGGAAGTCCTGTGTGATGACTCTGTGAACATATATTTCAGAATATGACACATTAATT
CATGCATAACAATGCACGGTTTGAATTATGAACTTAGTCTTTCATGAAGTCAGAGATGCC
TCTGACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               127-230, + strand, RNAz p=0.963151

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-230, + strand, RNAz p=0.963151

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               12-428, gnl|bosTau2|chr21 (21036977-21036567)
               

               
               12-428, gnl|Hg17|chr15 (74310420-74309237)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-428, gnl|bosTau2|chr21 (21036977-21036567)
               

               
               12-428, gnl|Hg17|chr15 (74310420-74309237)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	12-428, gnl\|bosTau2\|chr21 (21036977-21036567)
	12-428, gnl\|Hg17\|chr15 (74310420-74309237)