Non-Coding RNA Search

rste18_h23.y1

Sequence:


               
               ACTAAGTAGAAACACTTTAAGAAAAGTAAACTCCGTGCTTTTCTGCTGTCATATTTGATT
TGAGCTGTGCTCTGATGGTTGTTTGAAGCTAACATGAAATGCAGTGCCTGCCTGACCCAT
TTTAGCAGCCCATTATCATAATTTCACTGTCGTATGGCCACTGAGTTAATGTACTTACAA
ATGACAGAGAAAGTGTGTTACATGACCTTAGGGTTTTCAAAAATTAAATGACGTCGTAGG
TCGTATTTCAAAGAATAGCTAAGGAGAACGGTTTTCTTTCCTGCACAAAGTGTCACTACG
CATAGCAACAGGATATTGTATTTCTTTTTTATTACACAAAAATGTGAAGCTTTTAAACTC
CTAGATTCCCCACATAAAATTTAATATTGGGGTAGGGAATGAAATAGCCAGTGGATAAAT
CTGCTTCTCCCCCATCTCATCCTCTCTCTCTCTCTCCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAAGTAGAAACACTTTAAGAAAAGTAAACTCCGTGCTTTTCTGCTGTCATATTTGATT
TGAGCTGTGCTCTGATGGTTGTTTGAAGCTAACATGAAATGCAGTGCCTGCCTGACCCAT
TTTAGCAGCCCATTATCATAATTTCACTGTCGTATGGCCACTGAGTTAATGTACTTACAA
ATGACAGAGAAAGTGTGTTACATGACCTTAGGGTTTTCAAAAATTAAATGACGTCGTAGG
TCGTATTTCAAAGAATAGCTAAGGAGAACGGTTTTCTTTCCTGCACAAAGTGTCACTACG
CATAGCAACAGGATATTGTATTTCTTTTTTATTACACAAAAATGTGAAGCTTTTAAACTC
CTAGATTCCCCACATAAAATTTAATATTGGGGTAGGGAATGAAATAGCCAGTGGATAAAT
CTGCTTCTCCCCCATCTCATCCTCTCTCTCTCTCTCCAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               335-452, - strand, RNAz p=0.515777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-452, - strand, RNAz p=0.515777

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-452, gnl|bosTau2|chr24 (3560547-3560095)
               

               
               1-452, gnl|Hg17|chr18 (71106224-71106675)
               

               
               1-452, gnl|Mm7|chr18 (84383815-84383374)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-452, gnl|bosTau2|chr24 (3560547-3560095)
               

               
               1-452, gnl|Hg17|chr18 (71106224-71106675)
               

               
               1-452, gnl|Mm7|chr18 (84383815-84383374)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	1-452, gnl\|bosTau2\|chr24 (3560547-3560095)
	1-452, gnl\|Hg17\|chr18 (71106224-71106675)
	1-452, gnl\|Mm7\|chr18 (84383815-84383374)