Non-Coding RNA Search

rste25_p3.y1

Sequence:


               
               GATTCCTTATTTACTATTAACTTAAGAACTTGTAATGGCCTGTAAACATTTTCTCTCTTA
CTCTTCTTTCAAATTTACCTTCGTCTCTGCTTTTGAGTCATAATATTTAATGTTGTTCTG
CACATCTCTATACAGTTAACTTTTTGGCTTTCATTCTGTATAGATAAGAAAAATGTTATA
TTATAAACAGCCTACTCAGTGCAAATATTTATCTGTTTATCAAATCCACAATATGCTGTA
TAATACTGGTTTTACTATATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCCTTATTTACTATTAACTTAAGAACTTGTAATGGCCTGTAAACATTTTCTCTCTTA
CTCTTCTTTCAAATTTACCTTCGTCTCTGCTTTTGAGTCATAATATTTAATGTTGTTCTG
CACATCTCTATACAGTTAACTTTTTGGCTTTCATTCTGTATAGATAAGAAAAATGTTATA
TTATAAACAGCCTACTCAGTGCAAATATTTATCTGTTTATCAAATCCACAATATGCTGTA
TAATACTGGTTTTACTATATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, - strand, RNAz p=0.88489

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.88489

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-262, gnl|bosTau2|chr10 (36892035-36892295)
               

               
               1-262, gnl|canFam2|chr30 (28310327-28310938)
               

               
               1-262, gnl|danRer3|chr25 (27094716-27094118)
               

               
               1-262, gnl|dasNov1|scaffold_1786 (51603-50996)
               

               
               1-262, gnl|echTel1|scaffold_308470 (2052-2664)
               

               
               1-262, gnl|fr1|chrUn (78917158-78917805)
               

               
               1-262, gnl|galGal2|chr10 (5825438-5824830)
               

               
               1-262, gnl|hg17|chr15 (58569685-58570287)
               

               
               1-262, gnl|Hg17|chr15 (58570099-58569841)
               

               
               1-262, gnl|loxAfr1|scaffold_19471 (4625-4012)
               

               
               1-262, gnl|mm7|chr9 (69418470-69417862)
               

               
               1-262, gnl|Mm7|chr9 (69418051-69418307)
               

               
               1-262, gnl|monDom2|scaffold_12 (54105316-54104710)
               

               
               1-262, gnl|panTro1|chr16 (58994439-58995041)
               

               
               1-262, gnl|rheMac2|chr7 (38909414-38910013)
               

               
               1-262, gnl|rn3|chr8 (73844107-73843504)
               

               
               1-262, gnl|tetNig1|chr13 (7124065-7123456)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-262, gnl|bosTau2|chr10 (36892035-36892295)
               

               
               1-262, gnl|canFam2|chr30 (28310327-28310938)
               

               
               1-262, gnl|danRer3|chr25 (27094716-27094118)
               

               
               1-262, gnl|dasNov1|scaffold_1786 (51603-50996)
               

               
               1-262, gnl|echTel1|scaffold_308470 (2052-2664)
               

               
               1-262, gnl|fr1|chrUn (78917158-78917805)
               

               
               1-262, gnl|galGal2|chr10 (5825438-5824830)
               

               
               1-262, gnl|hg17|chr15 (58569685-58570287)
               

               
               1-262, gnl|Hg17|chr15 (58570099-58569841)
               

               
               1-262, gnl|loxAfr1|scaffold_19471 (4625-4012)
               

               
               1-262, gnl|mm7|chr9 (69418470-69417862)
               

               
               1-262, gnl|Mm7|chr9 (69418051-69418307)
               

               
               1-262, gnl|monDom2|scaffold_12 (54105316-54104710)
               

               
               1-262, gnl|panTro1|chr16 (58994439-58995041)
               

               
               1-262, gnl|rheMac2|chr7 (38909414-38910013)
               

               
               1-262, gnl|rn3|chr8 (73844107-73843504)
               

               
               1-262, gnl|tetNig1|chr13 (7124065-7123456)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	1-262, gnl\|bosTau2\|chr10 (36892035-36892295)
	1-262, gnl\|canFam2\|chr30 (28310327-28310938)
	1-262, gnl\|danRer3\|chr25 (27094716-27094118)
	1-262, gnl\|dasNov1\|scaffold_1786 (51603-50996)
	1-262, gnl\|echTel1\|scaffold_308470 (2052-2664)
	1-262, gnl\|fr1\|chrUn (78917158-78917805)
	1-262, gnl\|galGal2\|chr10 (5825438-5824830)
	1-262, gnl\|hg17\|chr15 (58569685-58570287)
	1-262, gnl\|Hg17\|chr15 (58570099-58569841)
	1-262, gnl\|loxAfr1\|scaffold_19471 (4625-4012)
	1-262, gnl\|mm7\|chr9 (69418470-69417862)
	1-262, gnl\|Mm7\|chr9 (69418051-69418307)
	1-262, gnl\|monDom2\|scaffold_12 (54105316-54104710)
	1-262, gnl\|panTro1\|chr16 (58994439-58995041)
	1-262, gnl\|rheMac2\|chr7 (38909414-38910013)
	1-262, gnl\|rn3\|chr8 (73844107-73843504)
	1-262, gnl\|tetNig1\|chr13 (7124065-7123456)