Non-Coding RNA Search

rste29_g23.y1

Sequence:


               
               CACGAGAAAAAAACAAAAAAAAAAAACCACGAGTGTGTGAGAGAGAAAAGGCGATACCAA
GCTGGTTTTGAAAGCTGCGTGATGCTCAGAAATGCCCATCCCATCTGTGATGCCATATAA
TAGGGCACTGGGAACTGGAAAGGAAATGAGAACAGGAGGAAGGGTGAAGGGCTGAGTCAG
AAGTCTGGCCAGATGGGAAATAGCGCCTTGGTGCCTTTTGCTCCTAAAAGTCACTTCTGA
GTTTAAAGAGACCAGAAGTGCCAGCCACCTGTACTGGAGCCCATCAAGCATGTCTGGCCT
GGAGTGGCTTTTTTTGCGGGGAGGGTGtttgggccatgcccatggcatgcagaagttctg
gggccagggatcaaacctgagccacagcagcgacaacactgaatcctttatctctaggca
actggagaactccTGGAGTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGAGAAAAAAACAAAAAAAAAAAACCACGAGTGTGTGAGAGAGAAAAGGCGATACCAA
GCTGGTTTTGAAAGCTGCGTGATGCTCAGAAATGCCCATCCCATCTGTGATGCCATATAA
TAGGGCACTGGGAACTGGAAAGGAAATGAGAACAGGAGGAAGGGTGAAGGGCTGAGTCAG
AAGTCTGGCCAGATGGGAAATAGCGCCTTGGTGCCTTTTGCTCCTAAAAGTCACTTCTGA
GTTTAAAGAGACCAGAAGTGCCAGCCACCTGTACTGGAGCCCATCAAGCATGTCTGGCCT
GGAGTGGCTTTTTTTGCGGGGAGGGTGtttgggccatgcccatggcatgcagaagttctg
gggccagggatcaaacctgagccacagcagcgacaacactgaatcctttatctctaggca
actggagaactccTGGAGTGGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-189, - strand, RNAz p=0.993876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-189, - strand, RNAz p=0.993876

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               47-313, gnl|bosTau2|chr19 (40331029-40331311)
               

               
               47-313, gnl|canFam2|chr9 (14729823-14730065)
               

               
               47-313, gnl|dasNov1|scaffold_154851 (3473-3625)
               

               
               47-313, gnl|echTel1|scaffold_298459 (7660-7858)
               

               
               47-313, gnl|hg17|chr17 (59042543-59042749)
               

               
               47-313, gnl|Hg17|chr17 (59042564-59042840)
               

               
               47-313, gnl|loxAfr1|scaffold_2991 (22004-21797)
               

               
               47-313, gnl|mm7|chr11 (106183155-106183329)
               

               
               47-313, gnl|panTro1|chr19 (46095481-46095273)
               

               
               47-313, gnl|rheMac2|chr16 (59126145-59126348)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-313, gnl|bosTau2|chr19 (40331029-40331311)
               

               
               47-313, gnl|canFam2|chr9 (14729823-14730065)
               

               
               47-313, gnl|dasNov1|scaffold_154851 (3473-3625)
               

               
               47-313, gnl|echTel1|scaffold_298459 (7660-7858)
               

               
               47-313, gnl|hg17|chr17 (59042543-59042749)
               

               
               47-313, gnl|Hg17|chr17 (59042564-59042840)
               

               
               47-313, gnl|loxAfr1|scaffold_2991 (22004-21797)
               

               
               47-313, gnl|mm7|chr11 (106183155-106183329)
               

               
               47-313, gnl|panTro1|chr19 (46095481-46095273)
               

               
               47-313, gnl|rheMac2|chr16 (59126145-59126348)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	47-313, gnl\|bosTau2\|chr19 (40331029-40331311)
	47-313, gnl\|canFam2\|chr9 (14729823-14730065)
	47-313, gnl\|dasNov1\|scaffold_154851 (3473-3625)
	47-313, gnl\|echTel1\|scaffold_298459 (7660-7858)
	47-313, gnl\|hg17\|chr17 (59042543-59042749)
	47-313, gnl\|Hg17\|chr17 (59042564-59042840)
	47-313, gnl\|loxAfr1\|scaffold_2991 (22004-21797)
	47-313, gnl\|mm7\|chr11 (106183155-106183329)
	47-313, gnl\|panTro1\|chr19 (46095481-46095273)
	47-313, gnl\|rheMac2\|chr16 (59126145-59126348)