Non-Coding RNA Search

rste33_c2.y1

Sequence:


               
               TCTGTAGAAACTGTCTCCCTTGTCCTCCAAGGAAACATGATTCTCGTTCATCACTGGTTG
CCAACACCAAGTGCTCCCAGCACTGGCCTCGTTACTGTGTAGCCTGTCAGTTAAAGATCA
TTATCTGCCAAGCCATCTGTTATTTTCTCTTAGGAGAGGGTGTTATTTCAGTTCTATGGG
TATCCTTTAAATTGTCCCCTACATGTCGTGTAGCAGCTAAATGTAGTCCAGGGGTTGAGT
CCTGTTGAGAGCAACGGGAATCTGTGTCCCACTTTTGAAATCGTTAGTGGTGATGGTATA
ATGTTGGATGGCCCAAAAGGAAGAGGTGAACTGGGAACTGTGAAAAATGCAGCCAAATGA
GAGTCTGGTCTTCGCCATCCTGGAAGGTTGTTGCTTTTAGAGGAATTATTGGCTTCCTGA
TTTAGTTGTGCTTCTTATAACAGGGCATAGTGAGGCCCTAATATTAGCCCCTGTTCTGGA
TACTGGCTAGCCATTGGTGATGGCAGTTATGTGAGATTTCCCACTTTTCATGCTTCTCTT
TCCCAGCTAAGAAAATTTTGGGGAAATTCCTGGTGTGGTTCAGTGGGTTAAGAATACCAC
TCGTGTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTAGAAACTGTCTCCCTTGTCCTCCAAGGAAACATGATTCTCGTTCATCACTGGTTG
CCAACACCAAGTGCTCCCAGCACTGGCCTCGTTACTGTGTAGCCTGTCAGTTAAAGATCA
TTATCTGCCAAGCCATCTGTTATTTTCTCTTAGGAGAGGGTGTTATTTCAGTTCTATGGG
TATCCTTTAAATTGTCCCCTACATGTCGTGTAGCAGCTAAATGTAGTCCAGGGGTTGAGT
CCTGTTGAGAGCAACGGGAATCTGTGTCCCACTTTTGAAATCGTTAGTGGTGATGGTATA
ATGTTGGATGGCCCAAAAGGAAGAGGTGAACTGGGAACTGTGAAAAATGCAGCCAAATGA
GAGTCTGGTCTTCGCCATCCTGGAAGGTTGTTGCTTTTAGAGGAATTATTGGCTTCCTGA
TTTAGTTGTGCTTCTTATAACAGGGCATAGTGAGGCCCTAATATTAGCCCCTGTTCTGGA
TACTGGCTAGCCATTGGTGATGGCAGTTATGTGAGATTTCCCACTTTTCATGCTTCTCTT
TCCCAGCTAAGAAAATTTTGGGGAAATTCCTGGTGTGGTTCAGTGGGTTAAGAATACCAC
TCGTGTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-342, + strand, RNAz p=0.746107

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-342, + strand, RNAz p=0.746107

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-431, gnl|bosTau2|chr13 (12311528-12311099)
               

               
               1-431, gnl|Hg17|chr10 (24448952-24449396)
               

               
               1-431, gnl|Mm7|chr2 (20473987-20474409)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-431, gnl|bosTau2|chr13 (12311528-12311099)
               

               
               1-431, gnl|Hg17|chr10 (24448952-24449396)
               

               
               1-431, gnl|Mm7|chr2 (20473987-20474409)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	1-431, gnl\|bosTau2\|chr13 (12311528-12311099)
	1-431, gnl\|Hg17\|chr10 (24448952-24449396)
	1-431, gnl\|Mm7\|chr2 (20473987-20474409)