Non-Coding RNA Search

rsto219_g24.y1

Sequence:


               
               ATGTAATTTGATTTTGAGACATGACAGCTTATTTAtttatttatttagctttttagggct
gcacccatggcatatagaggttcccaggctagggggccaattggagctctagccactggc
ctatgccacagccacagcaatgctagatccgaactgcatctgcgacctacaccacagctc
atggcaatgccagactgtcaacccactgagtgaggccagggattgaagctgcaaccccat
ggttcctagtcagattcatttccgctacaccatgacaggaactcTACATGACAGCTTATT
TTTAATTGGCTTATTGAGCAAAGCTGGTTTTGTGAGAATGTTGATTTCACTCCTGATTTA
GTTCAGATGGAATAAGTTAGCATCAGCTGTGATAATATGCCATTATTGTGCTTTGAACTG
TCATTTTTTTGGCACCAACATTAAGATAGTGTTAAACCGACTAAACTAAGACGTATTATT
CATATAAGAAGAGGTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTAATTTGATTTTGAGACATGACAGCTTATTTAtttatttatttagctttttagggct
gcacccatggcatatagaggttcccaggctagggggccaattggagctctagccactggc
ctatgccacagccacagcaatgctagatccgaactgcatctgcgacctacaccacagctc
atggcaatgccagactgtcaacccactgagtgaggccagggattgaagctgcaaccccat
ggttcctagtcagattcatttccgctacaccatgacaggaactcTACATGACAGCTTATT
TTTAATTGGCTTATTGAGCAAAGCTGGTTTTGTGAGAATGTTGATTTCACTCCTGATTTA
GTTCAGATGGAATAAGTTAGCATCAGCTGTGATAATATGCCATTATTGTGCTTTGAACTG
TCATTTTTTTGGCACCAACATTAAGATAGTGTTAAACCGACTAAACTAAGACGTATTATT
CATATAAGAAGAGGTTTCTG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               290-499, gnl|bosTau2|chr3 (64071380-64071163)
               

               
               290-499, gnl|canFam2|chr15 (12536042-12535927)
               

               
               290-499, gnl|dasNov1|scaffold_16482 (4713-4852)
               

               
               290-499, gnl|echTel1|scaffold_311421 (50584-50694)
               

               
               290-499, gnl|hg17|chr1 (51943804-51943978)
               

               
               290-499, gnl|Hg17|chr1 (51943847-51944060)
               

               
               290-499, gnl|mm7|chr4 (108459445-108459331)
               

               
               290-499, gnl|oryCun1|scaffold_145642 (5680-5542)
               

               
               290-499, gnl|panTro1|chr1 (50166739-50166913)
               

               
               290-499, gnl|rheMac2|chr1 (54585653-54585881)
               

               
               290-499, gnl|rn3|chr5 (130434456-130434351)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               290-499, gnl|bosTau2|chr3 (64071380-64071163)
               

               
               290-499, gnl|canFam2|chr15 (12536042-12535927)
               

               
               290-499, gnl|dasNov1|scaffold_16482 (4713-4852)
               

               
               290-499, gnl|echTel1|scaffold_311421 (50584-50694)
               

               
               290-499, gnl|hg17|chr1 (51943804-51943978)
               

               
               290-499, gnl|Hg17|chr1 (51943847-51944060)
               

               
               290-499, gnl|mm7|chr4 (108459445-108459331)
               

               
               290-499, gnl|oryCun1|scaffold_145642 (5680-5542)
               

               
               290-499, gnl|panTro1|chr1 (50166739-50166913)
               

               
               290-499, gnl|rheMac2|chr1 (54585653-54585881)
               

               
               290-499, gnl|rn3|chr5 (130434456-130434351)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sto (0.179824)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	290-499, gnl\|bosTau2\|chr3 (64071380-64071163)
	290-499, gnl\|canFam2\|chr15 (12536042-12535927)
	290-499, gnl\|dasNov1\|scaffold_16482 (4713-4852)
	290-499, gnl\|echTel1\|scaffold_311421 (50584-50694)
	290-499, gnl\|hg17\|chr1 (51943804-51943978)
	290-499, gnl\|Hg17\|chr1 (51943847-51944060)
	290-499, gnl\|mm7\|chr4 (108459445-108459331)
	290-499, gnl\|oryCun1\|scaffold_145642 (5680-5542)
	290-499, gnl\|panTro1\|chr1 (50166739-50166913)
	290-499, gnl\|rheMac2\|chr1 (54585653-54585881)
	290-499, gnl\|rn3\|chr5 (130434456-130434351)