Non-Coding RNA Search

rsto229_h15.y1

Sequence:


               
               AATGACTTTTATAGGAAAAGCCATATTTTTTCCACAATGTTTATCTGTCAGAAGAATAGA
CTCTGTGAGCACAAAGGGCTGCTTACTGGAAAAGATGAAAACAGTTTGCTGCCAATTTTC
TCTGGTGGAAAAAAAGTGCTTTGGCGACTAATGAATAACGAACCTCAGTTAACAATGTCT
GGAAGGCCCTGCTCTTGGCTCCCTGCACACGATGTGATGGATAGAAATTAGGAAATTAAA
ACTGATTTTGTTTCTCCAAATTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGACTTTTATAGGAAAAGCCATATTTTTTCCACAATGTTTATCTGTCAGAAGAATAGA
CTCTGTGAGCACAAAGGGCTGCTTACTGGAAAAGATGAAAACAGTTTGCTGCCAATTTTC
TCTGGTGGAAAAAAAGTGCTTTGGCGACTAATGAATAACGAACCTCAGTTAACAATGTCT
GGAAGGCCCTGCTCTTGGCTCCCTGCACACGATGTGATGGATAGAAATTAGGAAATTAAA
ACTGATTTTGTTTCTCCAAATTTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.559779

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.559779

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-265, gnl|bosTau2|chr18 (36680128-36680391)
               

               
               1-265, gnl|canFam2|chr1 (121683013-121682569)
               

               
               1-265, gnl|dasNov1|scaffold_163174 (446-6)
               

               
               1-265, gnl|echTel1|scaffold_55923 (9036-9503)
               

               
               1-265, gnl|galGal2|chr11 (10543890-10544329)
               

               
               1-265, gnl|hg17|chr19 (38572861-38573316)
               

               
               1-265, gnl|Hg17|chr19 (38572863-38573125)
               

               
               1-265, gnl|mm7|chr7 (31930967-31930530)
               

               
               1-265, gnl|Mm7|chr7 (31930963-31930704)
               

               
               1-265, gnl|monDom2|scaffold_35 (2745621-2745173)
               

               
               1-265, gnl|panTro1|chr20 (35086542-35086997)
               

               
               1-265, gnl|rheMac2|chr19 (39913205-39913659)
               

               
               1-265, gnl|rn3|chr1 (87623310-87622872)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr18 (36680128-36680391)
               

               
               1-265, gnl|canFam2|chr1 (121683013-121682569)
               

               
               1-265, gnl|dasNov1|scaffold_163174 (446-6)
               

               
               1-265, gnl|echTel1|scaffold_55923 (9036-9503)
               

               
               1-265, gnl|galGal2|chr11 (10543890-10544329)
               

               
               1-265, gnl|hg17|chr19 (38572861-38573316)
               

               
               1-265, gnl|Hg17|chr19 (38572863-38573125)
               

               
               1-265, gnl|mm7|chr7 (31930967-31930530)
               

               
               1-265, gnl|Mm7|chr7 (31930963-31930704)
               

               
               1-265, gnl|monDom2|scaffold_35 (2745621-2745173)
               

               
               1-265, gnl|panTro1|chr20 (35086542-35086997)
               

               
               1-265, gnl|rheMac2|chr19 (39913205-39913659)
               

               
               1-265, gnl|rn3|chr1 (87623310-87622872)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sto (0.179824)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	1-265, gnl\|bosTau2\|chr18 (36680128-36680391)
	1-265, gnl\|canFam2\|chr1 (121683013-121682569)
	1-265, gnl\|dasNov1\|scaffold_163174 (446-6)
	1-265, gnl\|echTel1\|scaffold_55923 (9036-9503)
	1-265, gnl\|galGal2\|chr11 (10543890-10544329)
	1-265, gnl\|hg17\|chr19 (38572861-38573316)
	1-265, gnl\|Hg17\|chr19 (38572863-38573125)
	1-265, gnl\|mm7\|chr7 (31930967-31930530)
	1-265, gnl\|Mm7\|chr7 (31930963-31930704)
	1-265, gnl\|monDom2\|scaffold_35 (2745621-2745173)
	1-265, gnl\|panTro1\|chr20 (35086542-35086997)
	1-265, gnl\|rheMac2\|chr19 (39913205-39913659)
	1-265, gnl\|rn3\|chr1 (87623310-87622872)