Non-Coding RNA Search

rsto233_a11.y1

Sequence:


               
               TCCAGAGGGGCCATAAAAAACAGATGGTCTCATTAGGAACAATTTATGCATATATATTTC
GAAGAGTTCAGCAGAGCCGGGGTAGGTTTGCAGCCCCTGCGTCAGGCAGGAGCAAAATAT
CACCACTTGCAAATGTTTCCAGTTTGCAAAATAATGGCCTATCCAAAGCAGCTAAGCAAC
GAATTACTCAAACACTAGAAGGTTAGATGCCAATATTATCACATTCCTCTTGTTCCTTAA
ACCCTCCTCCTCCGCGGTCACTGGATTTCGGAGGGAGGCTCTCGGGCCGTGCACCTCTCT
ACGCCCGTGGCTTCCTTTCAAACACTATTTCCAATCTCCAAGTCAAATCACTTATTAATT
ATAGAGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGAGGGGCCATAAAAAACAGATGGTCTCATTAGGAACAATTTATGCATATATATTTC
GAAGAGTTCAGCAGAGCCGGGGTAGGTTTGCAGCCCCTGCGTCAGGCAGGAGCAAAATAT
CACCACTTGCAAATGTTTCCAGTTTGCAAAATAATGGCCTATCCAAAGCAGCTAAGCAAC
GAATTACTCAAACACTAGAAGGTTAGATGCCAATATTATCACATTCCTCTTGTTCCTTAA
ACCCTCCTCCTCCGCGGTCACTGGATTTCGGAGGGAGGCTCTCGGGCCGTGCACCTCTCT
ACGCCCGTGGCTTCCTTTCAAACACTATTTCCAATCTCCAAGTCAAATCACTTATTAATT
ATAGAGGCAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-199, - strand, RNAz p=0.971194
               

               
               164-274, - strand, RNAz p=0.980403
               

               
               240-370, - strand, RNAz p=0.919857

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, - strand, RNAz p=0.971194
               

               
               164-274, - strand, RNAz p=0.980403
               

               
               240-370, - strand, RNAz p=0.919857

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               136-244, - strand, RNAmicro p=0.998526

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               136-244, - strand, RNAmicro p=0.998526

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-370, gnl|bosTau2|chrX (32789283-32789650)
               

               
               1-370, gnl|canFam2|chrX (34532016-34532643)
               

               
               1-370, gnl|dasNov1|scaffold_2682 (29579-30189)
               

               
               1-370, gnl|echTel1|scaffold_290511 (34747-35358)
               

               
               1-370, gnl|galGal2|chr1 (106109615-106108937)
               

               
               1-370, gnl|hg17|chrX (39622936-39623552)
               

               
               1-370, gnl|Hg17|chrX (39623484-39623118)
               

               
               1-370, gnl|loxAfr1|scaffold_17449 (32483-31860)
               

               
               1-370, gnl|mm7|chrX (10433418-10434037)
               

               
               1-370, gnl|Mm7|chrX (10433969-10433603)
               

               
               1-370, gnl|monDom2|scaffold_29 (24110502-24109842)
               

               
               1-370, gnl|oryCun1|scaffold_204902 (105225-105854)
               

               
               1-370, gnl|panTro1|chrX (40846225-40846841)
               

               
               1-370, gnl|rheMac2|chrX (37751678-37752294)
               

               
               1-370, gnl|rn3|chrX (22917066-22916454)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-370, gnl|bosTau2|chrX (32789283-32789650)
               

               
               1-370, gnl|canFam2|chrX (34532016-34532643)
               

               
               1-370, gnl|dasNov1|scaffold_2682 (29579-30189)
               

               
               1-370, gnl|echTel1|scaffold_290511 (34747-35358)
               

               
               1-370, gnl|galGal2|chr1 (106109615-106108937)
               

               
               1-370, gnl|hg17|chrX (39622936-39623552)
               

               
               1-370, gnl|Hg17|chrX (39623484-39623118)
               

               
               1-370, gnl|loxAfr1|scaffold_17449 (32483-31860)
               

               
               1-370, gnl|mm7|chrX (10433418-10434037)
               

               
               1-370, gnl|Mm7|chrX (10433969-10433603)
               

               
               1-370, gnl|monDom2|scaffold_29 (24110502-24109842)
               

               
               1-370, gnl|oryCun1|scaffold_204902 (105225-105854)
               

               
               1-370, gnl|panTro1|chrX (40846225-40846841)
               

               
               1-370, gnl|rheMac2|chrX (37751678-37752294)
               

               
               1-370, gnl|rn3|chrX (22917066-22916454)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sto (0.179824)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	40-199, - strand, RNAz p=0.971194
	164-274, - strand, RNAz p=0.980403
	240-370, - strand, RNAz p=0.919857

	1-370, gnl\|bosTau2\|chrX (32789283-32789650)
	1-370, gnl\|canFam2\|chrX (34532016-34532643)
	1-370, gnl\|dasNov1\|scaffold_2682 (29579-30189)
	1-370, gnl\|echTel1\|scaffold_290511 (34747-35358)
	1-370, gnl\|galGal2\|chr1 (106109615-106108937)
	1-370, gnl\|hg17\|chrX (39622936-39623552)
	1-370, gnl\|Hg17\|chrX (39623484-39623118)
	1-370, gnl\|loxAfr1\|scaffold_17449 (32483-31860)
	1-370, gnl\|mm7\|chrX (10433418-10434037)
	1-370, gnl\|Mm7\|chrX (10433969-10433603)
	1-370, gnl\|monDom2\|scaffold_29 (24110502-24109842)
	1-370, gnl\|oryCun1\|scaffold_204902 (105225-105854)
	1-370, gnl\|panTro1\|chrX (40846225-40846841)
	1-370, gnl\|rheMac2\|chrX (37751678-37752294)
	1-370, gnl\|rn3\|chrX (22917066-22916454)