Non-Coding RNA Search

rsug05_f4.y1

Sequence:


               
               CCAGTATTTTTGATTTTTTTTTTTTTGAAAAGATGTTGTTGAATAGTTGTGCTATCATTT
GTTATCATCAGAAAATGCTTGCTGTAACAAGCATTTATCTGCTGGAGGGAACCGCTCTAC
TGATCAAGTTATACAGATAAGATCCCCACCCCTGTAGAAACCACAACTTAACACACTCTA
AGGCTTGACAAATGACTAGTTTTTATTTTCCAACTGCTTTATCTCTGTAAAATGATATGC
CAAATCATTGTAAGCTAATTGGTGTGGAAAGAATTCTTCCCTTAACTGATGTAAACAGTC
TGATTTTTGAAAACTTAACAACCGGGGCTCAGTGAGTTCAACACATTTTGCCTTCTCTGA
GACTGAAAACCCCTGCCTGCCCTGGTCACCACTGTATATTCAGCTTGGCACCCTCTCTTT
CACTTGTTTTTTTATTTTTGGTAAGACATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTATTTTTGATTTTTTTTTTTTTGAAAAGATGTTGTTGAATAGTTGTGCTATCATTT
GTTATCATCAGAAAATGCTTGCTGTAACAAGCATTTATCTGCTGGAGGGAACCGCTCTAC
TGATCAAGTTATACAGATAAGATCCCCACCCCTGTAGAAACCACAACTTAACACACTCTA
AGGCTTGACAAATGACTAGTTTTTATTTTCCAACTGCTTTATCTCTGTAAAATGATATGC
CAAATCATTGTAAGCTAATTGGTGTGGAAAGAATTCTTCCCTTAACTGATGTAAACAGTC
TGATTTTTGAAAACTTAACAACCGGGGCTCAGTGAGTTCAACACATTTTGCCTTCTCTGA
GACTGAAAACCCCTGCCTGCCCTGGTCACCACTGTATATTCAGCTTGGCACCCTCTCTTT
CACTTGTTTTTTTATTTTTGGTAAGACATCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               14-118, - strand, RNAz p=0.929571
               

               
               19-119, - strand, RNAz p=0.696454
               

               
               346-435, - strand, RNAz p=0.640677

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-118, - strand, RNAz p=0.929571
               

               
               19-119, - strand, RNAz p=0.696454
               

               
               346-435, - strand, RNAz p=0.640677

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               14-440, gnl|bosTau2|chr21 (12819322-12819748)
               

               
               14-440, gnl|canFam2|chr3 (56917899-56918701)
               

               
               14-440, gnl|dasNov1|scaffold_8313 (7669-6940)
               

               
               14-440, gnl|echTel1|scaffold_311890 (6217-5441)
               

               
               14-440, gnl|hg17|chr15 (83149448-83150236)
               

               
               14-440, gnl|Hg17|chr15 (83149552-83149988)
               

               
               14-440, gnl|loxAfr1|scaffold_23855 (5366-6141)
               

               
               14-440, gnl|mm7|chr7 (76915878-76916636)
               

               
               14-440, gnl|Mm7|chr7 (76915979-76916372)
               

               
               14-440, gnl|oryCun1|scaffold_199616 (14738-15477)
               

               
               14-440, gnl|panTro1|chr16 (83954700-83955488)
               

               
               14-440, gnl|rheMac2|chr7 (64491843-64491074)
               

               
               14-440, gnl|rn3|chr1 (137322326-137323053)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-440, gnl|bosTau2|chr21 (12819322-12819748)
               

               
               14-440, gnl|canFam2|chr3 (56917899-56918701)
               

               
               14-440, gnl|dasNov1|scaffold_8313 (7669-6940)
               

               
               14-440, gnl|echTel1|scaffold_311890 (6217-5441)
               

               
               14-440, gnl|hg17|chr15 (83149448-83150236)
               

               
               14-440, gnl|Hg17|chr15 (83149552-83149988)
               

               
               14-440, gnl|loxAfr1|scaffold_23855 (5366-6141)
               

               
               14-440, gnl|mm7|chr7 (76915878-76916636)
               

               
               14-440, gnl|Mm7|chr7 (76915979-76916372)
               

               
               14-440, gnl|oryCun1|scaffold_199616 (14738-15477)
               

               
               14-440, gnl|panTro1|chr16 (83954700-83955488)
               

               
               14-440, gnl|rheMac2|chr7 (64491843-64491074)
               

               
               14-440, gnl|rn3|chr1 (137322326-137323053)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	14-118, - strand, RNAz p=0.929571
	19-119, - strand, RNAz p=0.696454
	346-435, - strand, RNAz p=0.640677

	14-440, gnl\|bosTau2\|chr21 (12819322-12819748)
	14-440, gnl\|canFam2\|chr3 (56917899-56918701)
	14-440, gnl\|dasNov1\|scaffold_8313 (7669-6940)
	14-440, gnl\|echTel1\|scaffold_311890 (6217-5441)
	14-440, gnl\|hg17\|chr15 (83149448-83150236)
	14-440, gnl\|Hg17\|chr15 (83149552-83149988)
	14-440, gnl\|loxAfr1\|scaffold_23855 (5366-6141)
	14-440, gnl\|mm7\|chr7 (76915878-76916636)
	14-440, gnl\|Mm7\|chr7 (76915979-76916372)
	14-440, gnl\|oryCun1\|scaffold_199616 (14738-15477)
	14-440, gnl\|panTro1\|chr16 (83954700-83955488)
	14-440, gnl\|rheMac2\|chr7 (64491843-64491074)
	14-440, gnl\|rn3\|chr1 (137322326-137323053)