Non-Coding RNA Search

rsug05_l17.y1

Sequence:


               
               ATTCTGAAAACAAAATATTGAAAGAACAGAATATCGATTTTTTACCTTTGCACCAGACTG
AATTGCCAGGAAACACTTGTGCTCAGGATGCAGCGTCTTTTCTGCCTTCACAGCAGCCTT
GCTCTTCTCACAGCCAATCACTTTCAGATGCTGAATCTATTTCTAAACATATGTCTTTGT
CATATGTCACCAGTCAAGAGCCAGGTATTTTACAACAGAAAAATGCAATTCAAATGATCA
ATGCTGTTTTAGATACTGATAATGAATCTACAAAAGATAGGGAGAATACTTTTGTCCTAG
CAGATGTTCAAAAGACAGATGCCTTTACCCCTGTGTACTCTGAAAGCACTGTCCAAGAAG
CAGCACCAAATTTTGAGAAAGCTAATAGCCTGCCTGTTTTACCATTAGAAAAAGACTTTA
ATGGAAGTGATGCCTCTTCTCAGCCAAATACACATTATGCACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTGAAAACAAAATATTGAAAGAACAGAATATCGATTTTTTACCTTTGCACCAGACTG
AATTGCCAGGAAACACTTGTGCTCAGGATGCAGCGTCTTTTCTGCCTTCACAGCAGCCTT
GCTCTTCTCACAGCCAATCACTTTCAGATGCTGAATCTATTTCTAAACATATGTCTTTGT
CATATGTCACCAGTCAAGAGCCAGGTATTTTACAACAGAAAAATGCAATTCAAATGATCA
ATGCTGTTTTAGATACTGATAATGAATCTACAAAAGATAGGGAGAATACTTTTGTCCTAG
CAGATGTTCAAAAGACAGATGCCTTTACCCCTGTGTACTCTGAAAGCACTGTCCAAGAAG
CAGCACCAAATTTTGAGAAAGCTAATAGCCTGCCTGTTTTACCATTAGAAAAAGACTTTA
ATGGAAGTGATGCCTCTTCTCAGCCAAATACACATTATGCACTTA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-465, gnl|bosTau2|chr24 (28973629-28974093)
               

               
               1-465, gnl|canFam2|chr7 (78334753-78335832)
               

               
               1-465, gnl|dasNov1|scaffold_9213 (36793-35717)
               

               
               1-465, gnl|echTel1|scaffold_238075 (2841-3884)
               

               
               1-465, gnl|galGal2|chrUn (116420493-116421549)
               

               
               1-465, gnl|hg17|chr18 (9247369-9248439)
               

               
               1-465, gnl|Hg17|chr18 (9247623-9248084)
               

               
               1-465, gnl|loxAfr1|scaffold_22604 (39181-38117)
               

               
               1-465, gnl|mm7|chr17 (64201930-64200857)
               

               
               1-465, gnl|Mm7|chr17 (64201674-64201213)
               

               
               1-465, gnl|monDom2|scaffold_21 (23473960-23472899)
               

               
               1-465, gnl|oryCun1|scaffold_159707 (4258-5328)
               

               
               1-465, gnl|panTro1|chr17 (3417499-3416429)
               

               
               1-465, gnl|rheMac2|chr18 (5157958-5156891)
               

               
               1-465, gnl|rn3|chr9 (104973252-104972173)
               

               
               1-465, gnl|xenTro1|scaffold_333 (1029614-1028661)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-465, gnl|bosTau2|chr24 (28973629-28974093)
               

               
               1-465, gnl|canFam2|chr7 (78334753-78335832)
               

               
               1-465, gnl|dasNov1|scaffold_9213 (36793-35717)
               

               
               1-465, gnl|echTel1|scaffold_238075 (2841-3884)
               

               
               1-465, gnl|galGal2|chrUn (116420493-116421549)
               

               
               1-465, gnl|hg17|chr18 (9247369-9248439)
               

               
               1-465, gnl|Hg17|chr18 (9247623-9248084)
               

               
               1-465, gnl|loxAfr1|scaffold_22604 (39181-38117)
               

               
               1-465, gnl|mm7|chr17 (64201930-64200857)
               

               
               1-465, gnl|Mm7|chr17 (64201674-64201213)
               

               
               1-465, gnl|monDom2|scaffold_21 (23473960-23472899)
               

               
               1-465, gnl|oryCun1|scaffold_159707 (4258-5328)
               

               
               1-465, gnl|panTro1|chr17 (3417499-3416429)
               

               
               1-465, gnl|rheMac2|chr18 (5157958-5156891)
               

               
               1-465, gnl|rn3|chr9 (104973252-104972173)
               

               
               1-465, gnl|xenTro1|scaffold_333 (1029614-1028661)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sug (0.127291)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	1-465, gnl\|bosTau2\|chr24 (28973629-28974093)
	1-465, gnl\|canFam2\|chr7 (78334753-78335832)
	1-465, gnl\|dasNov1\|scaffold_9213 (36793-35717)
	1-465, gnl\|echTel1\|scaffold_238075 (2841-3884)
	1-465, gnl\|galGal2\|chrUn (116420493-116421549)
	1-465, gnl\|hg17\|chr18 (9247369-9248439)
	1-465, gnl\|Hg17\|chr18 (9247623-9248084)
	1-465, gnl\|loxAfr1\|scaffold_22604 (39181-38117)
	1-465, gnl\|mm7\|chr17 (64201930-64200857)
	1-465, gnl\|Mm7\|chr17 (64201674-64201213)
	1-465, gnl\|monDom2\|scaffold_21 (23473960-23472899)
	1-465, gnl\|oryCun1\|scaffold_159707 (4258-5328)
	1-465, gnl\|panTro1\|chr17 (3417499-3416429)
	1-465, gnl\|rheMac2\|chr18 (5157958-5156891)
	1-465, gnl\|rn3\|chr9 (104973252-104972173)
	1-465, gnl\|xenTro1\|scaffold_333 (1029614-1028661)