Non-Coding RNA Search

rsug06_k13.y1

Sequence:


               
               TAAAGGGCTACACAACTCAAAATAGTCTGATTTAAACTTATGCTCTGTGGTACATATGAA
AATGTTTTTTTATTAATTCCATTTCAGAATTTTTATGTTAAGAAGTGGTAAACTTTAGCT
CTTATGTTAAAGTATGTTAAGGATGTATTTTTATATTTTACATATTTATGTGATTTTTTT
TTAATCACAGATATTAGAATCATATTTTAAAGTTAGCTTTTAAAATTACATAGTTTGCCT
TTTTGTGTGTGACATCACTTTGTGTCATTACTGTATTATAATACAATATAAATTCAAGAT
TGGTAACAAGAACATAGACGTAGTCCCGTAAAATTCAGAGATGGTATTTGATAGGCAGTA
GTCTGCAAATGAGGAAACACTGAAGAACGTTCTTAGTGTTTTTCAGATCATTGCAGACCA
TACACTGCTGCTATACTTTTTTAGTGCTCTAAGCAATTTGACTCTCTTACTTGAATTTTT
AGCAAGAAATCATTAACAGTAACAACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAGGGCTACACAACTCAAAATAGTCTGATTTAAACTTATGCTCTGTGGTACATATGAA
AATGTTTTTTTATTAATTCCATTTCAGAATTTTTATGTTAAGAAGTGGTAAACTTTAGCT
CTTATGTTAAAGTATGTTAAGGATGTATTTTTATATTTTACATATTTATGTGATTTTTTT
TTAATCACAGATATTAGAATCATATTTTAAAGTTAGCTTTTAAAATTACATAGTTTGCCT
TTTTGTGTGTGACATCACTTTGTGTCATTACTGTATTATAATACAATATAAATTCAAGAT
TGGTAACAAGAACATAGACGTAGTCCCGTAAAATTCAGAGATGGTATTTGATAGGCAGTA
GTCTGCAAATGAGGAAACACTGAAGAACGTTCTTAGTGTTTTTCAGATCATTGCAGACCA
TACACTGCTGCTATACTTTTTTAGTGCTCTAAGCAATTTGACTCTCTTACTTGAATTTTT
AGCAAGAAATCATTAACAGTAACAACAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               352-456, - strand, RNAz p=0.999572

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-456, - strand, RNAz p=0.999572

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               359-430, AU147203 HEMBB1 Homo sapiens cDNA clone HEMBB1002705 3', mRNA 
(dbj|AU147203.1|), blast E-value=1e-19, identity=93.06% 
               

               
               359-430, BP417244 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP417244.1|), blast E-value=1e-19, identity=93.06% 
               

               
               359-430, DB521504 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB521504.1|), blast E-value=1e-19, identity=93.06% 
               

               
               359-430, DB539337 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB539337.1|), blast E-value=1e-19, identity=93.06% 
               

               
               359-430, nr38b01.s1 NCI_CGAP_Pr22 Homo sapiens cDNA clone IMAGE 
(gb|AA635821.1|), blast E-value=1e-19, identity=93.06% 
               

               
               352-456, 001017BEMN049328HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY111791.1|), blast E-value=6e-37, identity=94.29%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               359-430, AU147203 HEMBB1 Homo sapiens cDNA clone HEMBB1002705 3', mRNA 
(dbj|AU147203.1|), blast E-value=1e-19, identity=93.06% 
               

               
               359-430, BP417244 Homo sapiens small intestine Homo sapiens cDNA clone 
(dbj|BP417244.1|), blast E-value=1e-19, identity=93.06% 
               

               
               359-430, DB521504 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB521504.1|), blast E-value=1e-19, identity=93.06% 
               

               
               359-430, DB539337 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB539337.1|), blast E-value=1e-19, identity=93.06% 
               

               
               359-430, nr38b01.s1 NCI_CGAP_Pr22 Homo sapiens cDNA clone IMAGE 
(gb|AA635821.1|), blast E-value=1e-19, identity=93.06% 
               

               
               352-456, 001017BEMN049328HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY111791.1|), blast E-value=6e-37, identity=94.29%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-510, gnl|bosTau2|chr11 (12022166-12021661)
               

               
               1-510, gnl|Hg17|chr2 (32004564-32004067)
               

               
               1-510, gnl|Mm7|chr17 (72489242-72488738)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-510, gnl|bosTau2|chr11 (12022166-12021661)
               

               
               1-510, gnl|Hg17|chr2 (32004564-32004067)
               

               
               1-510, gnl|Mm7|chr17 (72489242-72488738)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	359-430, AU147203 HEMBB1 Homo sapiens cDNA clone HEMBB1002705 3', mRNA (dbj\|AU147203.1\|), blast E-value=1e-19, identity=93.06%
	359-430, BP417244 Homo sapiens small intestine Homo sapiens cDNA clone (dbj\|BP417244.1\|), blast E-value=1e-19, identity=93.06%
	359-430, DB521504 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB521504.1\|), blast E-value=1e-19, identity=93.06%
	359-430, DB539337 RIKEN full-length enriched human cDNA library, hippocampus (dbj\|DB539337.1\|), blast E-value=1e-19, identity=93.06%
	359-430, nr38b01.s1 NCI_CGAP_Pr22 Homo sapiens cDNA clone IMAGE (gb\|AA635821.1\|), blast E-value=1e-19, identity=93.06%
	352-456, 001017BEMN049328HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY111791.1\|), blast E-value=6e-37, identity=94.29%

	1-510, gnl\|bosTau2\|chr11 (12022166-12021661)
	1-510, gnl\|Hg17\|chr2 (32004564-32004067)
	1-510, gnl\|Mm7\|chr17 (72489242-72488738)