Non-Coding RNA Search

rsug08_n7.y1

Sequence:


               
               AGGAGTGGGCTCTGAGCAGGTGTTATATTCATTCTTTACAAACCATAAAAAAAATAATCT
CATTCCCAAACTGTAGTAATTGTTACAATTTTATAAAGAAAAAAGAATAGTATATGCAGA
AATTGACTTGATTTCCATTTGCAACAGGAAGACACTGGCTTTACATGAGTACAATTGGAC
AATTATTTTTGCTCTGCTCTGTTTTGCATGGAGTATTATGATTTTGAAAATTGCATTTCT
ACCTTTCATGTGCCTGAAGGCTATCCACTACATTCTGAAAGGCCTTGTTAAAATCCAAGC
TGCTCATTTCACTATTCTGTTGCTGGGTGAAAAGATAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGTGGGCTCTGAGCAGGTGTTATATTCATTCTTTACAAACCATAAAAAAAATAATCT
CATTCCCAAACTGTAGTAATTGTTACAATTTTATAAAGAAAAAAGAATAGTATATGCAGA
AATTGACTTGATTTCCATTTGCAACAGGAAGACACTGGCTTTACATGAGTACAATTGGAC
AATTATTTTTGCTCTGCTCTGTTTTGCATGGAGTATTATGATTTTGAAAATTGCATTTCT
ACCTTTCATGTGCCTGAAGGCTATCCACTACATTCTGAAAGGCCTTGTTAAAATCCAAGC
TGCTCATTTCACTATTCTGTTGCTGGGTGAAAAGATAAAAAG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-342, gnl|bosTau2|chr2 (54258721-54258383)
               

               
               1-342, gnl|canFam2|chr37 (20607379-20607902)
               

               
               1-342, gnl|dasNov1|scaffold_675 (56016-55506)
               

               
               1-342, gnl|echTel1|scaffold_309860 (5164-4645)
               

               
               1-342, gnl|galGal2|chr7 (2499878-2500437)
               

               
               1-342, gnl|hg17|chr2 (210420643-210421157)
               

               
               1-342, gnl|Hg17|chr2 (210420679-210421019)
               

               
               1-342, gnl|loxAfr1|scaffold_306 (145812-146336)
               

               
               1-342, gnl|mm7|chr1 (66678731-66679243)
               

               
               1-342, gnl|Mm7|chr1 (66678764-66679106)
               

               
               1-342, gnl|monDom2|scaffold_39 (13089219-13088688)
               

               
               1-342, gnl|panTro1|chr13_random (27377569-27378083)
               

               
               1-342, gnl|rheMac2|chr12 (73520093-73520603)
               

               
               1-342, gnl|rn3|chr9 (65402850-65403369)
               

               
               1-342, gnl|xenTro1|scaffold_1447 (17109-16441)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-342, gnl|bosTau2|chr2 (54258721-54258383)
               

               
               1-342, gnl|canFam2|chr37 (20607379-20607902)
               

               
               1-342, gnl|dasNov1|scaffold_675 (56016-55506)
               

               
               1-342, gnl|echTel1|scaffold_309860 (5164-4645)
               

               
               1-342, gnl|galGal2|chr7 (2499878-2500437)
               

               
               1-342, gnl|hg17|chr2 (210420643-210421157)
               

               
               1-342, gnl|Hg17|chr2 (210420679-210421019)
               

               
               1-342, gnl|loxAfr1|scaffold_306 (145812-146336)
               

               
               1-342, gnl|mm7|chr1 (66678731-66679243)
               

               
               1-342, gnl|Mm7|chr1 (66678764-66679106)
               

               
               1-342, gnl|monDom2|scaffold_39 (13089219-13088688)
               

               
               1-342, gnl|panTro1|chr13_random (27377569-27378083)
               

               
               1-342, gnl|rheMac2|chr12 (73520093-73520603)
               

               
               1-342, gnl|rn3|chr9 (65402850-65403369)
               

               
               1-342, gnl|xenTro1|scaffold_1447 (17109-16441)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               sug (0.127291)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	1-342, gnl\|bosTau2\|chr2 (54258721-54258383)
	1-342, gnl\|canFam2\|chr37 (20607379-20607902)
	1-342, gnl\|dasNov1\|scaffold_675 (56016-55506)
	1-342, gnl\|echTel1\|scaffold_309860 (5164-4645)
	1-342, gnl\|galGal2\|chr7 (2499878-2500437)
	1-342, gnl\|hg17\|chr2 (210420643-210421157)
	1-342, gnl\|Hg17\|chr2 (210420679-210421019)
	1-342, gnl\|loxAfr1\|scaffold_306 (145812-146336)
	1-342, gnl\|mm7\|chr1 (66678731-66679243)
	1-342, gnl\|Mm7\|chr1 (66678764-66679106)
	1-342, gnl\|monDom2\|scaffold_39 (13089219-13088688)
	1-342, gnl\|panTro1\|chr13_random (27377569-27378083)
	1-342, gnl\|rheMac2\|chr12 (73520093-73520603)
	1-342, gnl\|rn3\|chr9 (65402850-65403369)
	1-342, gnl\|xenTro1\|scaffold_1447 (17109-16441)