Non-Coding RNA Search

rsug09_d17.y1

Sequence:


               
               GAGGTTTGTTTTCTAAATGATATTATTTACTACCCGAAATCACTCATCATTGACCTTAAA
AATAATATATTCTACTGACTTCATTATATTTGTTAGCTTTCGAGTACATCTTAGAGGCTT
GGAAGGGAAGATCACAGTGAAGAAACTGCTATACTAATCATATTTTCTTTTCCTTTTCCT
TAAATAGGAGCCTTGATTATAGTAGGAAGCTGAAAAACGTAAGTGTTTAACTTCACTTTC
CAAACTTTTTTCCTTCTAACTTTGATGGTTCAAGTGTAAAATTTAGCTCGTAAGTACAAT
GCCTCTTGGTATTTCATCATATGAGTATTTAGAAAGTACCATCAAGTAGCTTTTTGGTCT
TGCTAGAAAGACTCTTCCTTAGAAAACAAGTATATGTGCCTCTGATAGAATAATTAATGA
TTGTGATAGAAATAAAAATGGCAGGTTGAGGGAGGGGTCCTCTTTATTTAGATAAGGGTT
CCACCCAGAAATAAACAAATGAAAGCTTGCACTCTATTTGCAGTTTGGTTTCTTAAACCC
AAAATGATCTGTCTCAGCAGGAGCATTAGTTCTCTGCCATTGGTAGGCACAGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTTTGTTTTCTAAATGATATTATTTACTACCCGAAATCACTCATCATTGACCTTAAA
AATAATATATTCTACTGACTTCATTATATTTGTTAGCTTTCGAGTACATCTTAGAGGCTT
GGAAGGGAAGATCACAGTGAAGAAACTGCTATACTAATCATATTTTCTTTTCCTTTTCCT
TAAATAGGAGCCTTGATTATAGTAGGAAGCTGAAAAACGTAAGTGTTTAACTTCACTTTC
CAAACTTTTTTCCTTCTAACTTTGATGGTTCAAGTGTAAAATTTAGCTCGTAAGTACAAT
GCCTCTTGGTATTTCATCATATGAGTATTTAGAAAGTACCATCAAGTAGCTTTTTGGTCT
TGCTAGAAAGACTCTTCCTTAGAAAACAAGTATATGTGCCTCTGATAGAATAATTAATGA
TTGTGATAGAAATAAAAATGGCAGGTTGAGGGAGGGGTCCTCTTTATTTAGATAAGGGTT
CCACCCAGAAATAAACAAATGAAAGCTTGCACTCTATTTGCAGTTTGGTTTCTTAAACCC
AAAATGATCTGTCTCAGCAGGAGCATTAGTTCTCTGCCATTGGTAGGCACAGACG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-306, gnl|bosTau2|chr6 (30949482-30949777)
               

               
               5-306, gnl|Hg17|chr4 (41446637-41446921)
               

               
               5-306, gnl|Mm7|chr5 (66314960-66315229)
               


               
               359-593, gnl|bosTau2|chr6 (30949785-30950024)
               

               
               359-593, gnl|Hg17|chr4 (41446929-41447178)
               

               
               359-593, gnl|Mm7|chr5 (66315237-66315434)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-306, gnl|bosTau2|chr6 (30949482-30949777)
               

               
               5-306, gnl|Hg17|chr4 (41446637-41446921)
               

               
               5-306, gnl|Mm7|chr5 (66314960-66315229)
               


               
               359-593, gnl|bosTau2|chr6 (30949785-30950024)
               

               
               359-593, gnl|Hg17|chr4 (41446929-41447178)
               

               
               359-593, gnl|Mm7|chr5 (66315237-66315434)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	5-306, gnl\|bosTau2\|chr6 (30949482-30949777)
	5-306, gnl\|Hg17\|chr4 (41446637-41446921)
	5-306, gnl\|Mm7\|chr5 (66314960-66315229)

	359-593, gnl\|bosTau2\|chr6 (30949785-30950024)
	359-593, gnl\|Hg17\|chr4 (41446929-41447178)
	359-593, gnl\|Mm7\|chr5 (66315237-66315434)