Non-Coding RNA Search

rsug15_b24.y1

Sequence:


               
               AAGAATTTGAGAGGCAGCGTACCATATGACTTCTCAAGGAATCATCAAATGCTTAGGCTA
ATTTAGATAGATTAGTAAAGTGATAAATTTGAGTCCCATGTGTGGTCTTGTTTAAAGTCT
GACCTCACCTCCAACCTCTACCCTAAGGGTAGGAATCTGCATTGAAAAGCTCAAGATGGG
GTAAGAAGCCAGAACAGCTGTTTCTAAAGGGCCAAGTCAAGATGTCAATTATTGGATGCA
GTGAACTGACAGTGATTACTCCATTTGACCCCATCCCTTCAGGACAACACAAATTGAGGA
AATACAACTTTGACTCAAAGGGTGCATTAACTAATTAAAAGGTCATTGCCACCTTCTTGT
CAGTGATTAGCTCAGAAATGGACATGTGATTCAGTTCTTGGGATTGAGACACAAATAGAG
GATTATCAGAGTTTCTAAAGAATTCTTGACTCGAGAGCAACTGGAAGCCTCTTTTTCTCT
CACACTGAATATGAACAAGAAAACATGAAGCACGGATTGCTGCTGGCAGTTGACTTACAG
CCTGGGAGCTGGAGTCCAGCCATAGGATGAGGCTGTAAAGGTCAACAGCCAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATTTGAGAGGCAGCGTACCATATGACTTCTCAAGGAATCATCAAATGCTTAGGCTA
ATTTAGATAGATTAGTAAAGTGATAAATTTGAGTCCCATGTGTGGTCTTGTTTAAAGTCT
GACCTCACCTCCAACCTCTACCCTAAGGGTAGGAATCTGCATTGAAAAGCTCAAGATGGG
GTAAGAAGCCAGAACAGCTGTTTCTAAAGGGCCAAGTCAAGATGTCAATTATTGGATGCA
GTGAACTGACAGTGATTACTCCATTTGACCCCATCCCTTCAGGACAACACAAATTGAGGA
AATACAACTTTGACTCAAAGGGTGCATTAACTAATTAAAAGGTCATTGCCACCTTCTTGT
CAGTGATTAGCTCAGAAATGGACATGTGATTCAGTTCTTGGGATTGAGACACAAATAGAG
GATTATCAGAGTTTCTAAAGAATTCTTGACTCGAGAGCAACTGGAAGCCTCTTTTTCTCT
CACACTGAATATGAACAAGAAAACATGAAGCACGGATTGCTGCTGGCAGTTGACTTACAG
CCTGGGAGCTGGAGTCCAGCCATAGGATGAGGCTGTAAAGGTCAACAGCCAAGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               154-260, + strand, RNAz p=0.976375
               

               
               475-594, - strand, RNAz p=0.568097

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-260, + strand, RNAz p=0.976375
               

               
               475-594, - strand, RNAz p=0.568097

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-380, gnl|bosTau2|chr16 (41642279-41642664)
               

               
               1-380, gnl|Hg17|chr1 (170192085-170192479)
               


               
               387-594, gnl|bosTau2|chr16 (41642652-41642861)
               

               
               387-594, gnl|Hg17|chr1 (170192470-170192697)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-380, gnl|bosTau2|chr16 (41642279-41642664)
               

               
               1-380, gnl|Hg17|chr1 (170192085-170192479)
               


               
               387-594, gnl|bosTau2|chr16 (41642652-41642861)
               

               
               387-594, gnl|Hg17|chr1 (170192470-170192697)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	154-260, + strand, RNAz p=0.976375
	475-594, - strand, RNAz p=0.568097

	1-380, gnl\|bosTau2\|chr16 (41642279-41642664)
	1-380, gnl\|Hg17\|chr1 (170192085-170192479)

	387-594, gnl\|bosTau2\|chr16 (41642652-41642861)
	387-594, gnl\|Hg17\|chr1 (170192470-170192697)