rsug18_h4.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGAATAATCCTAGAAACACAGGCACTTGCAAATCACTGGACGAGAAGCTAAAAGAAAAA GAATCTGCTTTACAGTTAGCAGAGGAAAATATTCTGTCAAGCAGACAAAGTAATTAATGA ACTGAGGCTTCGATTGCCTGCCACTGCAGAAAGAGAAAAGCTTATAGCTGAACTCGGCAG AAAAGAGGTGGAGCCAAAATCTCATCACACGTTGAAACTTGCTCATCAGACCATTGCAAA CATGCAAGCAAGGCTTAAATCAAAAGGAAGAAGTGCTAAAGAAGTACCAACATCTTCTAG AAAAAGCCAGAGAGGAACAAAGAGAAACTGTTAAGAAACATGAAGAAGAACTTCATACTC TTCATCATAAATTAGAACTACAGGCTGATAATTCCCTCAGTAAATTCAAGGAAACGGCTT GGGATTTAATAAAGCAGCCTCCTACTCCAGTTCCTACCAACAAGCATTTTATTCGTTTGG CTGAGATGGAACAGACAGTTGCAGAGCAGGATGACTCCCTTGCCTCACTTGTAATCAAAC TGAAACAAGTATCTCAGGATTTAGAGAGACAGAAAGAAATCACTGAATTAAAAATCAAGG A |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGAATAATCCTAGAAACACAGGCACTTGCAAATCACTGGACGAGAAGCTAAAAGAAAAA GAATCTGCTTTACAGTTAGCAGAGGAAAATATTCTGTCAAGCAGACAAAGTAATTAATGA ACTGAGGCTTCGATTGCCTGCCACTGCAGAAAGAGAAAAGCTTATAGCTGAACTCGGCAG AAAAGAGGTGGAGCCAAAATCTCATCACACGTTGAAACTTGCTCATCAGACCATTGCAAA CATGCAAGCAAGGCTTAAATCAAAAGGAAGAAGTGCTAAAGAAGTACCAACATCTTCTAG AAAAAGCCAGAGAGGAACAAAGAGAAACTGTTAAGAAACATGAAGAAGAACTTCATACTC TTCATCATAAATTAGAACTACAGGCTGATAATTCCCTCAGTAAATTCAAGGAAACGGCTT GGGATTTAATAAAGCAGCCTCCTACTCCAGTTCCTACCAACAAGCATTTTATTCGTTTGG CTGAGATGGAACAGACAGTTGCAGAGCAGGATGACTCCCTTGCCTCACTTGTAATCAAAC TGAAACAAGTATCTCAGGATTTAGAGAGACAGAAAGAAATCACTGAATTAAAAATCAAGG A |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 44-162, - strand, RNAz p=0.620758 | |
| 197-315, + strand, RNAz p=0.664497 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 44-162, - strand, RNAz p=0.620758 | |
| 197-315, + strand, RNAz p=0.664497 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 44-315, gnl|bosTau2|chr10 (47332459-47332190) | |
| 44-315, gnl|canFam2|chr15 (32241255-32241508) | |
| 44-315, gnl|danRer3|chr25 (12515854-12515603) | |
| 44-315, gnl|dasNov1|scaffold_22110 (90103-90353) | |
| 44-315, gnl|echTel1|scaffold_309593 (50622-50371) | |
| 44-315, gnl|fr1|chrUn (245554410-245554159) | |
| 44-315, gnl|galGal2|chr1 (39616046-39616297) | |
| 44-315, gnl|hg17|chr12 (86980814-86981068) | |
| 44-315, gnl|Hg17|chr12 (86981099-86980830) | |
| 44-315, gnl|loxAfr1|scaffold_13437 (43782-43529) | |
| 44-315, gnl|mm7|chr10 (100028466-100028223) | |
| 44-315, gnl|Mm7|chr10 (100028190-100028459) | |
| 44-315, gnl|monDom2|scaffold_36 (24399831-24400083) | |
| 44-315, gnl|oryCun1|scaffold_211312 (9959-10214) | |
| 44-315, gnl|panTro1|chr10 (89113812-89114066) | |
| 44-315, gnl|rheMac2|chr11 (89208152-89208406) | |
| 44-315, gnl|rn3|chr7 (38212736-38212493) | |
| 44-315, gnl|tetNig1|chr13 (11898784-11899036) | |
| 44-315, gnl|xenTro1|scaffold_237 (1222318-1222055) | |
| 403-601, gnl|bosTau2|chr10 (47330885-47330687) | |
| 403-601, gnl|Hg17|chr12 (86979495-86979297) | |
| 403-601, gnl|Mm7|chr10 (100029864-100030062) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-315, gnl|bosTau2|chr10 (47332459-47332190) | |
| 44-315, gnl|canFam2|chr15 (32241255-32241508) | |
| 44-315, gnl|danRer3|chr25 (12515854-12515603) | |
| 44-315, gnl|dasNov1|scaffold_22110 (90103-90353) | |
| 44-315, gnl|echTel1|scaffold_309593 (50622-50371) | |
| 44-315, gnl|fr1|chrUn (245554410-245554159) | |
| 44-315, gnl|galGal2|chr1 (39616046-39616297) | |
| 44-315, gnl|hg17|chr12 (86980814-86981068) | |
| 44-315, gnl|Hg17|chr12 (86981099-86980830) | |
| 44-315, gnl|loxAfr1|scaffold_13437 (43782-43529) | |
| 44-315, gnl|mm7|chr10 (100028466-100028223) | |
| 44-315, gnl|Mm7|chr10 (100028190-100028459) | |
| 44-315, gnl|monDom2|scaffold_36 (24399831-24400083) | |
| 44-315, gnl|oryCun1|scaffold_211312 (9959-10214) | |
| 44-315, gnl|panTro1|chr10 (89113812-89114066) | |
| 44-315, gnl|rheMac2|chr11 (89208152-89208406) | |
| 44-315, gnl|rn3|chr7 (38212736-38212493) | |
| 44-315, gnl|tetNig1|chr13 (11898784-11899036) | |
| 44-315, gnl|xenTro1|scaffold_237 (1222318-1222055) | |
| 403-601, gnl|bosTau2|chr10 (47330885-47330687) | |
| 403-601, gnl|Hg17|chr12 (86979495-86979297) | |
| 403-601, gnl|Mm7|chr10 (100029864-100030062) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.127291) |