Non-Coding RNA Search

rsug19_b22.y1

Sequence:


               
               AACCGATGTGGAATTTGTGAGGGTCCCTTCCCATGACCCTAATGAAGATCACCTGTGGTC
CCAAGAGCTCTTTCAACCTAACTTACCTTTCCAAACTCAGAAGTAGACGCCTTTCCTCAT
AACTGTCATTTGCTAAAGAGGATGCAGCATTTAGACTAGGTACTGGCTACTCTTCCCATC
AGGATTCACTTTGCCAAACTTAAAATTCTACCCCAGATAGCAGTCAGCTGCCTTAAGGAA
TATTGTCATAGAAATACCTGCAATGTTAAGGTCCATAGCGCCAAGAACTCATGTTTAGAG
AAGAGGTAACCCATGGTTTTATTTATTCCCCAGAGCCAAGGTAAGATAATAAAACCCATG
GAGGAAAATTCAAAATTAAGGGGATATGAGCTCTCCAGTCAGTGGTGGTCAAGGCCAGAG
CAAAATGACTACTCTGGCACTTTGGCTGGCTGCCAAACCATGGAGGAGACAAGAACTGAG
GTCATTTCTAAAAAGCTTCTGTGATGGTACAGAACAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCGATGTGGAATTTGTGAGGGTCCCTTCCCATGACCCTAATGAAGATCACCTGTGGTC
CCAAGAGCTCTTTCAACCTAACTTACCTTTCCAAACTCAGAAGTAGACGCCTTTCCTCAT
AACTGTCATTTGCTAAAGAGGATGCAGCATTTAGACTAGGTACTGGCTACTCTTCCCATC
AGGATTCACTTTGCCAAACTTAAAATTCTACCCCAGATAGCAGTCAGCTGCCTTAAGGAA
TATTGTCATAGAAATACCTGCAATGTTAAGGTCCATAGCGCCAAGAACTCATGTTTAGAG
AAGAGGTAACCCATGGTTTTATTTATTCCCCAGAGCCAAGGTAAGATAATAAAACCCATG
GAGGAAAATTCAAAATTAAGGGGATATGAGCTCTCCAGTCAGTGGTGGTCAAGGCCAGAG
CAAAATGACTACTCTGGCACTTTGGCTGGCTGCCAAACCATGGAGGAGACAAGAACTGAG
GTCATTTCTAAAAAGCTTCTGTGATGGTACAGAACAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               360-478, - strand, RNAz p=0.87605

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-478, - strand, RNAz p=0.87605

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               88-518, gnl|bosTau2|chr18 (32344142-32344580)
               

               
               88-518, gnl|Hg17|chr16 (70450782-70450400)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-518, gnl|bosTau2|chr18 (32344142-32344580)
               

               
               88-518, gnl|Hg17|chr16 (70450782-70450400)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	88-518, gnl\|bosTau2\|chr18 (32344142-32344580)
	88-518, gnl\|Hg17\|chr16 (70450782-70450400)