Non-Coding RNA Search

rsug20_l18.y1

Sequence:


               
               CTCTTATATGGACCCCAGTCATTCGCTTAGGGTATACCCTTATTCAGGACAACCTAATCT
TAACCGGTTTGTTTAAAAGACTCTATTTTTAAATAAGGTCATATTTTGAGGTTCTGGTAC
ACATGAATTTTGGGGGAACACAGTTCGACCCAGGGAACATCCTCGTACAGTCTTCTTCGT
GCATGCACAGGAATATATTAGAATGAATTCCTAAAAGGCCCACAAGAGACTCCTTCCTCA
GACTCCTACCAGCCAAATATGTTTTGTCACTTTTGCCAATCTGATAGGCAAAAACACTAC
CTCATTTCAAACCTTCTGATAGTAAGTATCAAAAATGTACTCAACCTCTCTAGATCAGAA
ATTCCACCTCTGGGCATCGATTTTAAGGAAACAAGGATGGTAGGCAAGATTGTTTCATTG
TTCATAATCGTAAAAAATGGAAGCCATTTAAAGATGCCTTCGTTGATTACAGCACATTCA
TAGGTAAAATCTTTGCAGCCATTAAAACTCATGTTGTAAGTTGGGGGTTCTTAATCTGGG
CTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTATATGGACCCCAGTCATTCGCTTAGGGTATACCCTTATTCAGGACAACCTAATCT
TAACCGGTTTGTTTAAAAGACTCTATTTTTAAATAAGGTCATATTTTGAGGTTCTGGTAC
ACATGAATTTTGGGGGAACACAGTTCGACCCAGGGAACATCCTCGTACAGTCTTCTTCGT
GCATGCACAGGAATATATTAGAATGAATTCCTAAAAGGCCCACAAGAGACTCCTTCCTCA
GACTCCTACCAGCCAAATATGTTTTGTCACTTTTGCCAATCTGATAGGCAAAAACACTAC
CTCATTTCAAACCTTCTGATAGTAAGTATCAAAAATGTACTCAACCTCTCTAGATCAGAA
ATTCCACCTCTGGGCATCGATTTTAAGGAAACAAGGATGGTAGGCAAGATTGTTTCATTG
TTCATAATCGTAAAAAATGGAAGCCATTTAAAGATGCCTTCGTTGATTACAGCACATTCA
TAGGTAAAATCTTTGCAGCCATTAAAACTCATGTTGTAAGTTGGGGGTTCTTAATCTGGG
CTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-364, - strand, RNAz p=0.517203

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-364, - strand, RNAz p=0.517203

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               216-545, gnl|bosTau2|chr18 (4991561-4991903)
               

               
               216-545, gnl|canFam2|chr5 (76978205-76978479)
               

               
               216-545, gnl|hg17|chr10 (135265478-135265774)
               

               
               216-545, gnl|Hg17|chr16 (75795535-75794878)
               

               
               216-545, gnl|panTro1|chr8 (138123529-138123825)
               

               
               216-545, gnl|rheMac2|chr9 (133220312-133220606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-545, gnl|bosTau2|chr18 (4991561-4991903)
               

               
               216-545, gnl|canFam2|chr5 (76978205-76978479)
               

               
               216-545, gnl|hg17|chr10 (135265478-135265774)
               

               
               216-545, gnl|Hg17|chr16 (75795535-75794878)
               

               
               216-545, gnl|panTro1|chr8 (138123529-138123825)
               

               
               216-545, gnl|rheMac2|chr9 (133220312-133220606)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	216-545, gnl\|bosTau2\|chr18 (4991561-4991903)
	216-545, gnl\|canFam2\|chr5 (76978205-76978479)
	216-545, gnl\|hg17\|chr10 (135265478-135265774)
	216-545, gnl\|Hg17\|chr16 (75795535-75794878)
	216-545, gnl\|panTro1\|chr8 (138123529-138123825)
	216-545, gnl\|rheMac2\|chr9 (133220312-133220606)