Non-Coding RNA Search

rsug24_l18.y1

Sequence:


               
               CTTCCCATCTCAGCACCTCTACACAAAACACTTCTTATAGCCTTCCTCTGGCTGTCTTTC
ATCCAGTTAACTCCTCTCAGGTATCAATTAGACACCACTTTCGAGGAAAGTTCTTCCCTA
ACTCACTGGTCTATAATCAATCTGTTTGGTATAAGCCTACATAGAAGTCCTTTTTTTTTT
TTTTCTTTTTGAAGACTTTCCTCCATTTATAATTACACAGACATTAGCTTGAATGACCAA
TTAATAACTAATTCATATCTGTCCCCCAGGAGACCATAAGCTCTTGGAGAGTTAAACTTT
ACAGATTTTCTCCCACTATAGTATCCTTGAGGTTGGCCAAGTAGTAGTCACTCAAGTAAT
ATTGTTGTATGAATAAATGAATGATGCACCAAGTACAGTAGTTAGTCAAAAGTGTTAATT
CTTTTCCCCAAAGGAAATTTAAAGAAAGAAAACATCATCATGGAAATGGGATTATTTTGA
GAGGACTTCTCAGAAGAAATAACATATGAAGCATTTGTTATAACTTAGCACTTTTATTTT
ATTTCTTTTCACCTTAGGAATAATGGCTGCATCCATTTGTCTACCTGGATCTGTCTTCTA
TGGCATGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCCATCTCAGCACCTCTACACAAAACACTTCTTATAGCCTTCCTCTGGCTGTCTTTC
ATCCAGTTAACTCCTCTCAGGTATCAATTAGACACCACTTTCGAGGAAAGTTCTTCCCTA
ACTCACTGGTCTATAATCAATCTGTTTGGTATAAGCCTACATAGAAGTCCTTTTTTTTTT
TTTTCTTTTTGAAGACTTTCCTCCATTTATAATTACACAGACATTAGCTTGAATGACCAA
TTAATAACTAATTCATATCTGTCCCCCAGGAGACCATAAGCTCTTGGAGAGTTAAACTTT
ACAGATTTTCTCCCACTATAGTATCCTTGAGGTTGGCCAAGTAGTAGTCACTCAAGTAAT
ATTGTTGTATGAATAAATGAATGATGCACCAAGTACAGTAGTTAGTCAAAAGTGTTAATT
CTTTTCCCCAAAGGAAATTTAAAGAAAGAAAACATCATCATGGAAATGGGATTATTTTGA
GAGGACTTCTCAGAAGAAATAACATATGAAGCATTTGTTATAACTTAGCACTTTTATTTT
ATTTCTTTTCACCTTAGGAATAATGGCTGCATCCATTTGTCTACCTGGATCTGTCTTCTA
TGGCATGCTT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               5-344, gnl|bosTau2|chr3 (43862978-43863306)
               

               
               5-344, gnl|canFam2|chr6 (71233574-71233063)
               

               
               5-344, gnl|hg17|chr1 (79084976-79085465)
               

               
               5-344, gnl|Hg17|chr1 (79085453-79085143)
               

               
               5-344, gnl|mm7|chr3 (151428611-151428136)
               

               
               5-344, gnl|Mm7|chr3 (151428144-151428465)
               

               
               5-344, gnl|panTro1|chr1 (77671260-77671750)
               

               
               5-344, gnl|rheMac2|chr1 (81730956-81731444)
               

               
               5-344, gnl|rn3|chr2 (249865428-249864948)
               


               
               349-522, gnl|bosTau2|chr3 (43863363-43863532)
               

               
               349-522, gnl|Hg17|chr1 (79085108-79084946)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-344, gnl|bosTau2|chr3 (43862978-43863306)
               

               
               5-344, gnl|canFam2|chr6 (71233574-71233063)
               

               
               5-344, gnl|hg17|chr1 (79084976-79085465)
               

               
               5-344, gnl|Hg17|chr1 (79085453-79085143)
               

               
               5-344, gnl|mm7|chr3 (151428611-151428136)
               

               
               5-344, gnl|Mm7|chr3 (151428144-151428465)
               

               
               5-344, gnl|panTro1|chr1 (77671260-77671750)
               

               
               5-344, gnl|rheMac2|chr1 (81730956-81731444)
               

               
               5-344, gnl|rn3|chr2 (249865428-249864948)
               


               
               349-522, gnl|bosTau2|chr3 (43863363-43863532)
               

               
               349-522, gnl|Hg17|chr1 (79085108-79084946)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	5-344, gnl\|bosTau2\|chr3 (43862978-43863306)
	5-344, gnl\|canFam2\|chr6 (71233574-71233063)
	5-344, gnl\|hg17\|chr1 (79084976-79085465)
	5-344, gnl\|Hg17\|chr1 (79085453-79085143)
	5-344, gnl\|mm7\|chr3 (151428611-151428136)
	5-344, gnl\|Mm7\|chr3 (151428144-151428465)
	5-344, gnl\|panTro1\|chr1 (77671260-77671750)
	5-344, gnl\|rheMac2\|chr1 (81730956-81731444)
	5-344, gnl\|rn3\|chr2 (249865428-249864948)

	349-522, gnl\|bosTau2\|chr3 (43863363-43863532)
	349-522, gnl\|Hg17\|chr1 (79085108-79084946)