Non-Coding RNA Search

rsug25_f20.y1

Sequence:


               
               TAATATTAGAAAACATAATTTTAGGTCTTTCATAAAACTTTTGTGGAATTTGTGATATTT
ATTTCAATTCCTTTCTAGTGAATAATTAGATCATTTCTAAATAGTTCAATAAACACTAAT
GTTACGGTGAATATCTTCAAACATAAATCTTTATATAAAATAAGTAGTTATTTGGCACAG
AGAAAGTGGCAACTGAGAAGGGAAGAAAAAAGAGCTACCAGCAAAGGCATGAAGGCAAAT
GTGATGATATGTTTTGGAAAACGATTCTCAAGTGCCTGAAATTTGTGCATGAGTGTGGGA
CTTAGCCGTGCAAGATGTTTACACCGTGAGGGTGATAAAATGGATTTTTGAGAGTTCATA
TGACACAGTGGCTGTAATTAGAACAGCTGGATCGAATCTCCGGACTCACCATTTACTGAC
TGTGGTTGGTGCATTCGTTTTCCCGTATGTAAAATGTGGGTCGAGTATTGACTTAATTGG
GAATTTATGAGGTTACATGAGATAATGTAAAAGAGTGTTAAATATCTGGCATGTATAAAG
CTATCAACAAACAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATATTAGAAAACATAATTTTAGGTCTTTCATAAAACTTTTGTGGAATTTGTGATATTT
ATTTCAATTCCTTTCTAGTGAATAATTAGATCATTTCTAAATAGTTCAATAAACACTAAT
GTTACGGTGAATATCTTCAAACATAAATCTTTATATAAAATAAGTAGTTATTTGGCACAG
AGAAAGTGGCAACTGAGAAGGGAAGAAAAAAGAGCTACCAGCAAAGGCATGAAGGCAAAT
GTGATGATATGTTTTGGAAAACGATTCTCAAGTGCCTGAAATTTGTGCATGAGTGTGGGA
CTTAGCCGTGCAAGATGTTTACACCGTGAGGGTGATAAAATGGATTTTTGAGAGTTCATA
TGACACAGTGGCTGTAATTAGAACAGCTGGATCGAATCTCCGGACTCACCATTTACTGAC
TGTGGTTGGTGCATTCGTTTTCCCGTATGTAAAATGTGGGTCGAGTATTGACTTAATTGG
GAATTTATGAGGTTACATGAGATAATGTAAAAGAGTGTTAAATATCTGGCATGTATAAAG
CTATCAACAAACAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-389, - strand, RNAz p=0.539248

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-389, - strand, RNAz p=0.539248

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-551, gnl|bosTau2|chr14 (9209231-9208671)
               

               
               1-551, gnl|Hg17|chr8 (123129871-123130456)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-551, gnl|bosTau2|chr14 (9209231-9208671)
               

               
               1-551, gnl|Hg17|chr8 (123129871-123130456)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	1-551, gnl\|bosTau2\|chr14 (9209231-9208671)
	1-551, gnl\|Hg17\|chr8 (123129871-123130456)