Non-Coding RNA Search

rtes03_f19.y1

Sequence:


               
               AGGGAGGACTGCTGTTATTTAAGGAAACTGGTAACTGAAATCTGTGTAAAGTTCAGAATG
TGCAGAGAGAGGACTGCTTATATTCAGCTCCCTATTTGACATCCTCACTTGTTTAACAAG
TATCTCATACTTAACACGACCTAAACTCTGTTTAATTTTCTCCAACCCCAAGCCCACAGT
CCTCCCTGCCTCGTTAAGTGACGGCTCTACTCCTCTAGTTGTTTGGGTCAAAACCTTGGA
GTCATTTTTGACTCCTCACATTCTCTTATACTGCTCATCCAGTCCATCAGCTAGTCTTGT
AACTATGTTCAAAGTGTAATTAGAATCCTACCATTTCTCAGGAACCCCACTGCTCTCATC
CTCGTCTGGGCCATCATCATCTCTAGCCTACCTTCCTAATTTCTACCCCAGTGCACTCAC
TCTATTTTCCTTTCTAATCAGAATGACCCTTAAAAAATGTTAAGTTGATTATATGACTCC
TCTGCTCAAAATCCTTCAATGATTTCCAGTTTCAATCAGAGTAAAAGCCTAAGTTCTgtg
gcatgtggaagttccagtgccagaggttgaatccacgccgcagcagccacccaagacact
gcagtgacaacACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAGGACTGCTGTTATTTAAGGAAACTGGTAACTGAAATCTGTGTAAAGTTCAGAATG
TGCAGAGAGAGGACTGCTTATATTCAGCTCCCTATTTGACATCCTCACTTGTTTAACAAG
TATCTCATACTTAACACGACCTAAACTCTGTTTAATTTTCTCCAACCCCAAGCCCACAGT
CCTCCCTGCCTCGTTAAGTGACGGCTCTACTCCTCTAGTTGTTTGGGTCAAAACCTTGGA
GTCATTTTTGACTCCTCACATTCTCTTATACTGCTCATCCAGTCCATCAGCTAGTCTTGT
AACTATGTTCAAAGTGTAATTAGAATCCTACCATTTCTCAGGAACCCCACTGCTCTCATC
CTCGTCTGGGCCATCATCATCTCTAGCCTACCTTCCTAATTTCTACCCCAGTGCACTCAC
TCTATTTTCCTTTCTAATCAGAATGACCCTTAAAAAATGTTAAGTTGATTATATGACTCC
TCTGCTCAAAATCCTTCAATGATTTCCAGTTTCAATCAGAGTAAAAGCCTAAGTTCTgtg
gcatgtggaagttccagtgccagaggttgaatccacgccgcagcagccacccaagacact
gcagtgacaacACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               152-270, + strand, RNAz p=0.998445

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-270, + strand, RNAz p=0.998445

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-526, gnl|bosTau2|chr24 (23722984-23723510)
               

               
               3-526, gnl|Hg17|chr18 (18622216-18621700)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-526, gnl|bosTau2|chr24 (23722984-23723510)
               

               
               3-526, gnl|Hg17|chr18 (18622216-18621700)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	3-526, gnl\|bosTau2\|chr24 (23722984-23723510)
	3-526, gnl\|Hg17\|chr18 (18622216-18621700)