Non-Coding RNA Search

rtes03_h19.y1

Sequence:


               
               TATGTTCAGCCTAGAATTTGCAGGAAATATAATCACAGATTTTCCCATTGAAATAAAAAA
CTGCAGAAAAATAACTAAAGTTGAATTAAGTTATAATAAAATAATATATTTTCCGCTAGG
TTTGTGCGCTTTAGAGTCTCTTTATTATCTGAGTTTTAATGGAAATTACATTTCAGAAAT
ACCTGAAGACATATCTTTCAGTAAACAACTGCTTCATTTAGAGTTTAATGAAAACAAACT
CCTCATATTTTCTGAGCACTTATGCTCTCTTATTAATCTTGAATACCTGGATCTTGGTAA
AAACAAAATAAAGAAAATTCCACCATCTATTTCTAATATGGTATCACTCCATGTTCTTAT
TTTATGCTGTAATAAACTGGAAACTTTCCCTATAGAAGTGTGTACTTTAGAAAATTTGCA
AGTACTTGATCTTTCAGAAAATCAAATACAGAATATTCCTCCAGAGATCTGTAACTTAAA
AGGAATCCAGAAATTAAACATCTCAAGCAATCAATTTATTTATTTTCCTATTGAACTTTG
CCAACTTCAATCACTGGAAGAGCTGAATATAAGTCAGATAAATGGGAGAAAGTTAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTTCAGCCTAGAATTTGCAGGAAATATAATCACAGATTTTCCCATTGAAATAAAAAA
CTGCAGAAAAATAACTAAAGTTGAATTAAGTTATAATAAAATAATATATTTTCCGCTAGG
TTTGTGCGCTTTAGAGTCTCTTTATTATCTGAGTTTTAATGGAAATTACATTTCAGAAAT
ACCTGAAGACATATCTTTCAGTAAACAACTGCTTCATTTAGAGTTTAATGAAAACAAACT
CCTCATATTTTCTGAGCACTTATGCTCTCTTATTAATCTTGAATACCTGGATCTTGGTAA
AAACAAAATAAAGAAAATTCCACCATCTATTTCTAATATGGTATCACTCCATGTTCTTAT
TTTATGCTGTAATAAACTGGAAACTTTCCCTATAGAAGTGTGTACTTTAGAAAATTTGCA
AGTACTTGATCTTTCAGAAAATCAAATACAGAATATTCCTCCAGAGATCTGTAACTTAAA
AGGAATCCAGAAATTAAACATCTCAAGCAATCAATTTATTTATTTTCCTATTGAACTTTG
CCAACTTCAATCACTGGAAGAGCTGAATATAAGTCAGATAAATGGGAGAAAGTTAACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-359, + strand, RNAz p=0.523835

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, + strand, RNAz p=0.523835

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-596, gnl|bosTau2|chr4 (959299-958704)
               

               
               1-596, gnl|canFam2|chr14 (20755492-20756298)
               

               
               1-596, gnl|echTel1|scaffold_315915 (195160-195969)
               

               
               1-596, gnl|galGal2|chr2 (21817641-21818460)
               

               
               1-596, gnl|hg17|chr7 (91437223-91438029)
               

               
               1-596, gnl|Hg17|chr7 (91437842-91437247)
               

               
               1-596, gnl|loxAfr1|scaffold_11726 (14779-13973)
               

               
               1-596, gnl|mm7|chr5 (3857625-3856825)
               

               
               1-596, gnl|Mm7|chr5 (3857010-3857605)
               

               
               1-596, gnl|monDom2|scaffold_7 (60146683-60147488)
               

               
               1-596, gnl|oryCun1|scaffold_206745 (89985-90791)
               

               
               1-596, gnl|panTro1|chr6 (92992258-92993064)
               

               
               1-596, gnl|rheMac2|chr3 (125082619-125081930)
               

               
               1-596, gnl|rn3|chr4 (27017052-27017855)
               

               
               1-596, gnl|xenTro1|scaffold_182 (220819-220016)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-596, gnl|bosTau2|chr4 (959299-958704)
               

               
               1-596, gnl|canFam2|chr14 (20755492-20756298)
               

               
               1-596, gnl|echTel1|scaffold_315915 (195160-195969)
               

               
               1-596, gnl|galGal2|chr2 (21817641-21818460)
               

               
               1-596, gnl|hg17|chr7 (91437223-91438029)
               

               
               1-596, gnl|Hg17|chr7 (91437842-91437247)
               

               
               1-596, gnl|loxAfr1|scaffold_11726 (14779-13973)
               

               
               1-596, gnl|mm7|chr5 (3857625-3856825)
               

               
               1-596, gnl|Mm7|chr5 (3857010-3857605)
               

               
               1-596, gnl|monDom2|scaffold_7 (60146683-60147488)
               

               
               1-596, gnl|oryCun1|scaffold_206745 (89985-90791)
               

               
               1-596, gnl|panTro1|chr6 (92992258-92993064)
               

               
               1-596, gnl|rheMac2|chr3 (125082619-125081930)
               

               
               1-596, gnl|rn3|chr4 (27017052-27017855)
               

               
               1-596, gnl|xenTro1|scaffold_182 (220819-220016)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-596, gnl\|bosTau2\|chr4 (959299-958704)
	1-596, gnl\|canFam2\|chr14 (20755492-20756298)
	1-596, gnl\|echTel1\|scaffold_315915 (195160-195969)
	1-596, gnl\|galGal2\|chr2 (21817641-21818460)
	1-596, gnl\|hg17\|chr7 (91437223-91438029)
	1-596, gnl\|Hg17\|chr7 (91437842-91437247)
	1-596, gnl\|loxAfr1\|scaffold_11726 (14779-13973)
	1-596, gnl\|mm7\|chr5 (3857625-3856825)
	1-596, gnl\|Mm7\|chr5 (3857010-3857605)
	1-596, gnl\|monDom2\|scaffold_7 (60146683-60147488)
	1-596, gnl\|oryCun1\|scaffold_206745 (89985-90791)
	1-596, gnl\|panTro1\|chr6 (92992258-92993064)
	1-596, gnl\|rheMac2\|chr3 (125082619-125081930)
	1-596, gnl\|rn3\|chr4 (27017052-27017855)
	1-596, gnl\|xenTro1\|scaffold_182 (220819-220016)