Non-Coding RNA Search

rtes03_h21.y1

Sequence:


               
               CAAAAAACAGTGAAAGAGCAATAATGTGGGAGCTACAAGTACTGAAGGCTTTCGATCTTC
CTTGAGCAGATTTGATATGAAAAATGCTAGTGATGATGAAGATGTAAGAAATCAGAATGG
TGAAACTCGGCACGGTGATATTAACACCCACGACAATGAGAACTACGACCTCATTGACAT
AAGTGCTGGTGCAAGAGAGTTGGAGCAGTGGGAGGATGTCACACAAGTAATGGTTGATGA
CGTTAACACTGCAGAAGGTTAGTCTAAGCATGCACCCTGTGTGGGCAGAGGCTCCAGCAA
GTCCCATCACATATGCAGCCAAAGCGAGCACTGAACAGACCTGATGGGACATGGTGACCT
TATACAGCAGCGGGTTACAGATGGCCACATAGCGATCATAGGCCATTGAGGTCAACATAT
AGCATTCGGAGATGACAAAAAACAGAAAGAAAAACAGCTGAGTCATGCACCCGACGTAGG
AGATGATATTCCCCCTGGATACAAAGCTCATGAGCATCTTGGGCGTGAAAACAGAAGAGT
AACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAACAGTGAAAGAGCAATAATGTGGGAGCTACAAGTACTGAAGGCTTTCGATCTTC
CTTGAGCAGATTTGATATGAAAAATGCTAGTGATGATGAAGATGTAAGAAATCAGAATGG
TGAAACTCGGCACGGTGATATTAACACCCACGACAATGAGAACTACGACCTCATTGACAT
AAGTGCTGGTGCAAGAGAGTTGGAGCAGTGGGAGGATGTCACACAAGTAATGGTTGATGA
CGTTAACACTGCAGAAGGTTAGTCTAAGCATGCACCCTGTGTGGGCAGAGGCTCCAGCAA
GTCCCATCACATATGCAGCCAAAGCGAGCACTGAACAGACCTGATGGGACATGGTGACCT
TATACAGCAGCGGGTTACAGATGGCCACATAGCGATCATAGGCCATTGAGGTCAACATAT
AGCATTCGGAGATGACAAAAAACAGAAAGAAAAACAGCTGAGTCATGCACCCGACGTAGG
AGATGATATTCCCCCTGGATACAAAGCTCATGAGCATCTTGGGCGTGAAAACAGAAGAGT
AACAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|15293601|gb|AAK94993.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|15293601|gb|AAK94993.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               80-239, + strand, RNAz p=0.890532

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, + strand, RNAz p=0.890532

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-523, gnl|bosTau2|chr10 (15741920-15742442)
               

               
               1-523, gnl|Hg17|chr14 (20693115-20693637)
               

               
               1-523, gnl|Mm7|chr9 (37956246-37955727)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-523, gnl|bosTau2|chr10 (15741920-15742442)
               

               
               1-523, gnl|Hg17|chr14 (20693115-20693637)
               

               
               1-523, gnl|Mm7|chr9 (37956246-37955727)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-523, gnl\|bosTau2\|chr10 (15741920-15742442)
	1-523, gnl\|Hg17\|chr14 (20693115-20693637)
	1-523, gnl\|Mm7\|chr9 (37956246-37955727)