Non-Coding RNA Search

rtes04_e21.y1

Sequence:


               
               TGGTGTCACTTCAGATCTGATATTCCTGGGTCTGGACTTATAGATTATCTGTTGAAGATT
GATTCTTCCCCATGTCCTCTCCACATTCAGATCTCACATCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTGTCACTTCAGATCTGATATTCCTGGGTCTGGACTTATAGATTATCTGTTGAAGATT
GATTCTTCCCCATGTCCTCTCCACATTCAGATCTCACATCTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-104, - strand, RNAz p=0.895874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-104, - strand, RNAz p=0.895874

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014950, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014950, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-104, gnl|bosTau2|chr10 (51579234-51579337)
               

               
               1-104, gnl|canFam2|chr8 (41989293-41989543)
               

               
               1-104, gnl|dasNov1|scaffold_73006 (9681-9436)
               

               
               1-104, gnl|echTel1|scaffold_297403 (54546-54291)
               

               
               1-104, gnl|galGal2|chr5 (49653943-49653699)
               

               
               1-104, gnl|hg17|chr14 (64068294-64068550)
               

               
               1-104, gnl|Hg17|chr14 (64068463-64068358)
               

               
               1-104, gnl|loxAfr1|scaffold_2075 (114097-114349)
               

               
               1-104, gnl|mm7|chr12 (74353092-74353345)
               

               
               1-104, gnl|Mm7|chr12 (74353260-74353156)
               

               
               1-104, gnl|monDom2|scaffold_8 (78238688-78238921)
               

               
               1-104, gnl|oryCun1|scaffold_205866 (125053-125307)
               

               
               1-104, gnl|panTro1|chr15 (63636106-63636362)
               

               
               1-104, gnl|rheMac2|chr7 (127532583-127532838)
               

               
               1-104, gnl|rn3|chr6 (98993825-98994078)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-104, gnl|bosTau2|chr10 (51579234-51579337)
               

               
               1-104, gnl|canFam2|chr8 (41989293-41989543)
               

               
               1-104, gnl|dasNov1|scaffold_73006 (9681-9436)
               

               
               1-104, gnl|echTel1|scaffold_297403 (54546-54291)
               

               
               1-104, gnl|galGal2|chr5 (49653943-49653699)
               

               
               1-104, gnl|hg17|chr14 (64068294-64068550)
               

               
               1-104, gnl|Hg17|chr14 (64068463-64068358)
               

               
               1-104, gnl|loxAfr1|scaffold_2075 (114097-114349)
               

               
               1-104, gnl|mm7|chr12 (74353092-74353345)
               

               
               1-104, gnl|Mm7|chr12 (74353260-74353156)
               

               
               1-104, gnl|monDom2|scaffold_8 (78238688-78238921)
               

               
               1-104, gnl|oryCun1|scaffold_205866 (125053-125307)
               

               
               1-104, gnl|panTro1|chr15 (63636106-63636362)
               

               
               1-104, gnl|rheMac2|chr7 (127532583-127532838)
               

               
               1-104, gnl|rn3|chr6 (98993825-98994078)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-104, gnl\|bosTau2\|chr10 (51579234-51579337)
	1-104, gnl\|canFam2\|chr8 (41989293-41989543)
	1-104, gnl\|dasNov1\|scaffold_73006 (9681-9436)
	1-104, gnl\|echTel1\|scaffold_297403 (54546-54291)
	1-104, gnl\|galGal2\|chr5 (49653943-49653699)
	1-104, gnl\|hg17\|chr14 (64068294-64068550)
	1-104, gnl\|Hg17\|chr14 (64068463-64068358)
	1-104, gnl\|loxAfr1\|scaffold_2075 (114097-114349)
	1-104, gnl\|mm7\|chr12 (74353092-74353345)
	1-104, gnl\|Mm7\|chr12 (74353260-74353156)
	1-104, gnl\|monDom2\|scaffold_8 (78238688-78238921)
	1-104, gnl\|oryCun1\|scaffold_205866 (125053-125307)
	1-104, gnl\|panTro1\|chr15 (63636106-63636362)
	1-104, gnl\|rheMac2\|chr7 (127532583-127532838)
	1-104, gnl\|rn3\|chr6 (98993825-98994078)