Non-Coding RNA Search

rtes04_p3r1.y1

Sequence:


               
               TGAAGGAGAATCTAACCAGCTTCCCAATAAGGCAATTCTCTCAAGGTGAGTCACCCACAC
CCTGCAGGTAACAGGTGAAGGTCCCAGGAAGCACTGTTCCACTTTCTAGGCAACAGGAAC
CATACAATCAGCTTCTGAATCCCAGTATTCAACTCATCTCCAAACACATTTTTATTTAAA
TTCCTGAAGCCAAAGAATATAGCTCATCACTGTCCCCAGCCTTCTCTCTTCTTATCTTCA
TTCCAAAGATATTTAAGTGCCTACTACATGCAAGACATTGTATTTGGTACCGAATGGAGA
ATGGTTAACAGCAACAACAAAGCACGGCATTCTTGAGTGAAGTGGGAAAAATAAAGGACA
GAGAAAAGTTCTAGGGAAACAAACGGGCCACTGCCAGAGACTCACAGGGGAGGCTTTATT
CAGGGAAGTCTCATGTTCTAACTTTAATGTATATTCCTATTAAAATGTAGGTTCCAGTTT
AATTGGTCAAGGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGGAGAATCTAACCAGCTTCCCAATAAGGCAATTCTCTCAAGGTGAGTCACCCACAC
CCTGCAGGTAACAGGTGAAGGTCCCAGGAAGCACTGTTCCACTTTCTAGGCAACAGGAAC
CATACAATCAGCTTCTGAATCCCAGTATTCAACTCATCTCCAAACACATTTTTATTTAAA
TTCCTGAAGCCAAAGAATATAGCTCATCACTGTCCCCAGCCTTCTCTCTTCTTATCTTCA
TTCCAAAGATATTTAAGTGCCTACTACATGCAAGACATTGTATTTGGTACCGAATGGAGA
ATGGTTAACAGCAACAACAAAGCACGGCATTCTTGAGTGAAGTGGGAAAAATAAAGGACA
GAGAAAAGTTCTAGGGAAACAAACGGGCCACTGCCAGAGACTCACAGGGGAGGCTTTATT
CAGGGAAGTCTCATGTTCTAACTTTAATGTATATTCCTATTAAAATGTAGGTTCCAGTTT
AATTGGTCAAGGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               107-225, + strand, RNAz p=0.999579

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-225, + strand, RNAz p=0.999579

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-405, gnl|bosTau2|chr20 (20473572-20473182)
               

               
               2-405, gnl|Hg17|chr5 (40421649-40422080)
               

               
               2-405, gnl|Mm7|chr15 (5362366-5361981)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-405, gnl|bosTau2|chr20 (20473572-20473182)
               

               
               2-405, gnl|Hg17|chr5 (40421649-40422080)
               

               
               2-405, gnl|Mm7|chr15 (5362366-5361981)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	2-405, gnl\|bosTau2\|chr20 (20473572-20473182)
	2-405, gnl\|Hg17\|chr5 (40421649-40422080)
	2-405, gnl\|Mm7\|chr15 (5362366-5361981)