Non-Coding RNA Search

rtes06_n17.y1

Sequence:


               
               TGATATCATTTTCTGGCTCTTCTGATCCGGGCCTGTCAAAGTCCAGTGGTTTTCTGCAGG
TCATCTAGTGCCAATGAGTCAGAGGCTGTGGCTGCTGAATCATAAATTCAGAATCCGCAC
GGCTCCTGACTCTGTACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATATCATTTTCTGGCTCTTCTGATCCGGGCCTGTCAAAGTCCAGTGGTTTTCTGCAGG
TCATCTAGTGCCAATGAGTCAGAGGCTGTGGCTGCTGAATCATAAATTCAGAATCCGCAC
GGCTCCTGACTCTGTACCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-139, + strand, RNAz p=0.999934

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-139, + strand, RNAz p=0.999934

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-139, gnl|bosTau2|chr11 (59880107-59879969)
               

               
               1-139, gnl|canFam2|chr17 (17701398-17701677)
               

               
               1-139, gnl|dasNov1|scaffold_107993 (5220-4942)
               

               
               1-139, gnl|echTel1|scaffold_265181 (8889-9168)
               

               
               1-139, gnl|hg17|chr2 (19733155-19733440)
               

               
               1-139, gnl|Hg17|chr2 (19733471-19733326)
               

               
               1-139, gnl|mm7|chr12 (9325728-9325427)
               

               
               1-139, gnl|Mm7|chr12 (9325394-9325554)
               

               
               1-139, gnl|oryCun1|scaffold_208500 (70968-70691)
               

               
               1-139, gnl|panTro1|chr12 (20553260-20553542)
               

               
               1-139, gnl|rheMac2|chr13 (19510068-19510350)
               

               
               1-139, gnl|rn3|chr6 (32827440-32827136)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-139, gnl|bosTau2|chr11 (59880107-59879969)
               

               
               1-139, gnl|canFam2|chr17 (17701398-17701677)
               

               
               1-139, gnl|dasNov1|scaffold_107993 (5220-4942)
               

               
               1-139, gnl|echTel1|scaffold_265181 (8889-9168)
               

               
               1-139, gnl|hg17|chr2 (19733155-19733440)
               

               
               1-139, gnl|Hg17|chr2 (19733471-19733326)
               

               
               1-139, gnl|mm7|chr12 (9325728-9325427)
               

               
               1-139, gnl|Mm7|chr12 (9325394-9325554)
               

               
               1-139, gnl|oryCun1|scaffold_208500 (70968-70691)
               

               
               1-139, gnl|panTro1|chr12 (20553260-20553542)
               

               
               1-139, gnl|rheMac2|chr13 (19510068-19510350)
               

               
               1-139, gnl|rn3|chr6 (32827440-32827136)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-139, gnl\|bosTau2\|chr11 (59880107-59879969)
	1-139, gnl\|canFam2\|chr17 (17701398-17701677)
	1-139, gnl\|dasNov1\|scaffold_107993 (5220-4942)
	1-139, gnl\|echTel1\|scaffold_265181 (8889-9168)
	1-139, gnl\|hg17\|chr2 (19733155-19733440)
	1-139, gnl\|Hg17\|chr2 (19733471-19733326)
	1-139, gnl\|mm7\|chr12 (9325728-9325427)
	1-139, gnl\|Mm7\|chr12 (9325394-9325554)
	1-139, gnl\|oryCun1\|scaffold_208500 (70968-70691)
	1-139, gnl\|panTro1\|chr12 (20553260-20553542)
	1-139, gnl\|rheMac2\|chr13 (19510068-19510350)
	1-139, gnl\|rn3\|chr6 (32827440-32827136)