Non-Coding RNA Search

rtes06_p17.y1

Sequence:


               
               GATCATGATGGAATAGTTATGTGCTTGGCATGAAGAAGGGAGAAGCGGTGACAGTGTCAA
GACTTTACCTGGGCAGAAGATTGCAAGACTGGAACTAGGAGGGGTTCTTAACACACCCCA
GGAGAAAATTTTTATTGCTGCAGGATCTGAGATTAGAGGCTTCACAAAGAGAGGAAAACA
GTTCCTCTCTTTTGAAACAAACCTAACTGAAAGCATTAAAGCCATGCACATATCTGGCTC
AGACCTTTTTCTCAGTGCAAGTTACATCTATAACCATTATTGTGACTGTAAAGACCAACA
TTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCATGATGGAATAGTTATGTGCTTGGCATGAAGAAGGGAGAAGCGGTGACAGTGTCAA
GACTTTACCTGGGCAGAAGATTGCAAGACTGGAACTAGGAGGGGTTCTTAACACACCCCA
GGAGAAAATTTTTATTGCTGCAGGATCTGAGATTAGAGGCTTCACAAAGAGAGGAAAACA
GTTCCTCTCTTTTGAAACAAACCTAACTGAAAGCATTAAAGCCATGCACATATCTGGCTC
AGACCTTTTTCTCAGTGCAAGTTACATCTATAACCATTATTGTGACTGTAAAGACCAACA
TTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12858068|dbj|BAB31190.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12858068|dbj|BAB31190.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               50-166, - strand, RNAz p=0.852876
               

               
               88-226, - strand, RNAz p=0.919468

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-166, - strand, RNAz p=0.852876
               

               
               88-226, - strand, RNAz p=0.919468

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               50-226, gnl|bosTau2|chr6 (830508-830685)
               

               
               50-226, gnl|canFam2|chr19 (21297200-21297050)
               

               
               50-226, gnl|danRer3|chrUn (45141460-45141308)
               

               
               50-226, gnl|dasNov1|scaffold_9680 (4472-4625)
               

               
               50-226, gnl|echTel1|scaffold_284129 (82107-82260)
               

               
               50-226, gnl|fr1|chrUn (69235192-69235336)
               

               
               50-226, gnl|galGal2|chr4 (54456241-54456088)
               

               
               50-226, gnl|hg17|chr4 (123140251-123140404)
               

               
               50-226, gnl|Hg17|chr4 (123140440-123140263)
               

               
               50-226, gnl|loxAfr1|scaffold_923 (30074-29922)
               

               
               50-226, gnl|mm7|chr3 (36420952-36421101)
               

               
               50-226, gnl|Mm7|chr3 (36421137-36420960)
               

               
               50-226, gnl|monDom2|scaffold_32 (5450437-5450284)
               

               
               50-226, gnl|oryCun1|scaffold_164620 (4537-4690)
               

               
               50-226, gnl|panTro1|chr3 (139976790-139976943)
               

               
               50-226, gnl|rheMac2|chr5 (114237695-114237848)
               

               
               50-226, gnl|rn3|chr2 (123049674-123049823)
               

               
               50-226, gnl|tetNig1|chr20 (1907099-1907241)
               

               
               50-226, gnl|xenTro1|scaffold_1082 (292587-292426)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-226, gnl|bosTau2|chr6 (830508-830685)
               

               
               50-226, gnl|canFam2|chr19 (21297200-21297050)
               

               
               50-226, gnl|danRer3|chrUn (45141460-45141308)
               

               
               50-226, gnl|dasNov1|scaffold_9680 (4472-4625)
               

               
               50-226, gnl|echTel1|scaffold_284129 (82107-82260)
               

               
               50-226, gnl|fr1|chrUn (69235192-69235336)
               

               
               50-226, gnl|galGal2|chr4 (54456241-54456088)
               

               
               50-226, gnl|hg17|chr4 (123140251-123140404)
               

               
               50-226, gnl|Hg17|chr4 (123140440-123140263)
               

               
               50-226, gnl|loxAfr1|scaffold_923 (30074-29922)
               

               
               50-226, gnl|mm7|chr3 (36420952-36421101)
               

               
               50-226, gnl|Mm7|chr3 (36421137-36420960)
               

               
               50-226, gnl|monDom2|scaffold_32 (5450437-5450284)
               

               
               50-226, gnl|oryCun1|scaffold_164620 (4537-4690)
               

               
               50-226, gnl|panTro1|chr3 (139976790-139976943)
               

               
               50-226, gnl|rheMac2|chr5 (114237695-114237848)
               

               
               50-226, gnl|rn3|chr2 (123049674-123049823)
               

               
               50-226, gnl|tetNig1|chr20 (1907099-1907241)
               

               
               50-226, gnl|xenTro1|scaffold_1082 (292587-292426)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	50-166, - strand, RNAz p=0.852876
	88-226, - strand, RNAz p=0.919468

	50-226, gnl\|bosTau2\|chr6 (830508-830685)
	50-226, gnl\|canFam2\|chr19 (21297200-21297050)
	50-226, gnl\|danRer3\|chrUn (45141460-45141308)
	50-226, gnl\|dasNov1\|scaffold_9680 (4472-4625)
	50-226, gnl\|echTel1\|scaffold_284129 (82107-82260)
	50-226, gnl\|fr1\|chrUn (69235192-69235336)
	50-226, gnl\|galGal2\|chr4 (54456241-54456088)
	50-226, gnl\|hg17\|chr4 (123140251-123140404)
	50-226, gnl\|Hg17\|chr4 (123140440-123140263)
	50-226, gnl\|loxAfr1\|scaffold_923 (30074-29922)
	50-226, gnl\|mm7\|chr3 (36420952-36421101)
	50-226, gnl\|Mm7\|chr3 (36421137-36420960)
	50-226, gnl\|monDom2\|scaffold_32 (5450437-5450284)
	50-226, gnl\|oryCun1\|scaffold_164620 (4537-4690)
	50-226, gnl\|panTro1\|chr3 (139976790-139976943)
	50-226, gnl\|rheMac2\|chr5 (114237695-114237848)
	50-226, gnl\|rn3\|chr2 (123049674-123049823)
	50-226, gnl\|tetNig1\|chr20 (1907099-1907241)
	50-226, gnl\|xenTro1\|scaffold_1082 (292587-292426)