Non-Coding RNA Search

rtes07_b9.y1

Sequence:


               
               CCAGTGGGGGAACAAGGAGAGAGAGGAGAGCCTGGAGCAGAAGGCTATAAGGGCCATGTG
GGAGTGCCAGGACCAAGAGGGGCCGCTGGACAGCAAGGGCCCCCAGGTGAGCCGGGTGAG
CAGGGCGAGCGAGGACCCCGCGGAGAGAGAGGATCTGAAGGACTTCCAGGCCTGCCTGGG
CCGAAAGGCATTCGAGGACACCATGGAGCAGAAGGCGTTTCAGGGAATCCTGGAAAAGCT
GGGCCACCAGGAAAACAGGGACTTCCTGTAAGTGGACTGCATATCTCTCACTCTATTTCT
TGTGCCTAAGTGTCTCCTTACTAAGATCAGAGCTCTTTTGGCTGTCTTCCTTAGCTTTGA
CATTGGCTGAGGTTAACACAATCGTTTCTTTAATAGTGATTTTGAAATTGTGTGTATGCA
TGCCAGTGAGGACATTCTATTATATACTTTATATCTGATAACCTGTATTGTTACTTTATA
TCATTTTTGCACGTATAAAAGCTGGTAAATAGGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTGGGGGAACAAGGAGAGAGAGGAGAGCCTGGAGCAGAAGGCTATAAGGGCCATGTG
GGAGTGCCAGGACCAAGAGGGGCCGCTGGACAGCAAGGGCCCCCAGGTGAGCCGGGTGAG
CAGGGCGAGCGAGGACCCCGCGGAGAGAGAGGATCTGAAGGACTTCCAGGCCTGCCTGGG
CCGAAAGGCATTCGAGGACACCATGGAGCAGAAGGCGTTTCAGGGAATCCTGGAAAAGCT
GGGCCACCAGGAAAACAGGGACTTCCTGTAAGTGGACTGCATATCTCTCACTCTATTTCT
TGTGCCTAAGTGTCTCCTTACTAAGATCAGAGCTCTTTTGGCTGTCTTCCTTAGCTTTGA
CATTGGCTGAGGTTAACACAATCGTTTCTTTAATAGTGATTTTGAAATTGTGTGTATGCA
TGCCAGTGAGGACATTCTATTATATACTTTATATCTGATAACCTGTATTGTTACTTTATA
TCATTTTTGCACGTATAAAAGCTGGTAAATAGGAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-278, + strand, RNAz p=0.971428

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-278, + strand, RNAz p=0.971428

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               160-517, gnl|bosTau2|chr3 (43637851-43637479)
               

               
               160-517, gnl|Hg17|chr1 (85994599-85994229)
               

               
               160-517, gnl|Mm7|chr3 (145389314-145389662)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-517, gnl|bosTau2|chr3 (43637851-43637479)
               

               
               160-517, gnl|Hg17|chr1 (85994599-85994229)
               

               
               160-517, gnl|Mm7|chr3 (145389314-145389662)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	160-517, gnl\|bosTau2\|chr3 (43637851-43637479)
	160-517, gnl\|Hg17\|chr1 (85994599-85994229)
	160-517, gnl\|Mm7\|chr3 (145389314-145389662)