Non-Coding RNA Search

rtes09_g6.y1

Sequence:


               
               GCTCCAGGTGACAAACAGTGTAAACCAGAGGCGGCCCAAGGCACTTACTCAACCTCAGCT
GTTTCAGGCTCACAGGAGGTGCTGTATATCAATGGAAATGGTACCTACAGTTACCATAGT
TACAGAGGGCTAGGAGGGGGACTGCTAAATCTGAATGATGCTTCTAGTAGTGGACCCACC
GATCTCAGCATGAAGAGGCAGTTGGCAACCAGCTCAGGATCCTCCAGCAGTTCGAGCTCC
AGACCCCAGCTGAGTCCAACTGAAATCAATGCAGTGAGACAGCTCGTTGCAGGATATCGA
GAATCAGCTGCATTTTTATTGCGTTCCGCCGATGAACTGGAAAATCTTATTTTGCAACAG
AACTGAGTCAAATGACGATCCTCTTCACTGAGGTCTAAATTTGCAGTTTCCACTAATGAC
ATTTTGATTTCCCGGCAGAGATGCATCTGGTTTTACTGCACAGTCTTAAGAAAAATACTT
CCATTATGCCACATTGTCCTTGATCCATAAAGTGATGTGTAAAGGTGCTTCAAAGGAACT
CTGACCTCTGAAGTACTTGAGATACTTTAATGTGTCCAGCCTACTGCTTTTTATTTCAGT
GTGCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCAGGTGACAAACAGTGTAAACCAGAGGCGGCCCAAGGCACTTACTCAACCTCAGCT
GTTTCAGGCTCACAGGAGGTGCTGTATATCAATGGAAATGGTACCTACAGTTACCATAGT
TACAGAGGGCTAGGAGGGGGACTGCTAAATCTGAATGATGCTTCTAGTAGTGGACCCACC
GATCTCAGCATGAAGAGGCAGTTGGCAACCAGCTCAGGATCCTCCAGCAGTTCGAGCTCC
AGACCCCAGCTGAGTCCAACTGAAATCAATGCAGTGAGACAGCTCGTTGCAGGATATCGA
GAATCAGCTGCATTTTTATTGCGTTCCGCCGATGAACTGGAAAATCTTATTTTGCAACAG
AACTGAGTCAAATGACGATCCTCTTCACTGAGGTCTAAATTTGCAGTTTCCACTAATGAC
ATTTTGATTTCCCGGCAGAGATGCATCTGGTTTTACTGCACAGTCTTAAGAAAAATACTT
CCATTATGCCACATTGTCCTTGATCCATAAAGTGATGTGTAAAGGTGCTTCAAAGGAACT
CTGACCTCTGAAGTACTTGAGATACTTTAATGTGTCCAGCCTACTGCTTTTTATTTCAGT
GTGCCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860702|ref|XP_617134.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860702|ref|XP_617134.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               172-290, - strand, RNAz p=0.702317

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-290, - strand, RNAz p=0.702317

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               172-608, gnl|bosTau2|chr24 (17378200-17378637)
               

               
               172-608, gnl|Hg17|chr18 (29686998-29686561)
               

               
               172-608, gnl|Mm7|chr18 (23071853-23071417)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-608, gnl|bosTau2|chr24 (17378200-17378637)
               

               
               172-608, gnl|Hg17|chr18 (29686998-29686561)
               

               
               172-608, gnl|Mm7|chr18 (23071853-23071417)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	172-608, gnl\|bosTau2\|chr24 (17378200-17378637)
	172-608, gnl\|Hg17\|chr18 (29686998-29686561)
	172-608, gnl\|Mm7\|chr18 (23071853-23071417)