Non-Coding RNA Search

rtes09_h18.y1

Sequence:


               
               TGCAGGGAGTGTGGGCGAGGTTTCAGTGTGAAGTCAAGTCTCGTCACACACCAGAGGACA
CACACGGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGGGCGAGGCTTCAGTGTGAAGTCA
AATTTCATCACACACCAGAGGACACACACGGGGGAGAAGCCCTATGTCTGCAGGGAGTGT
GGGCGAGGCTTCAGTGTGAAGTCAAGTCTCATCACACACCAGAGGACACACACAGGGGAG
AAGCCCTATGTCTGCAGGGAAGGTGAGTGAGTCATTACCAACAAACCACATCTTAACCAC
AGAAGGATTAATGTTGCCACCAGATAGTCTATACCTCAGCTCTGCGAAGGCTTCAAAGGA
AGTCTGTGACCCCTTACAGTCCTCACAAGTGTCCTGAGTGCAGAAATAACTGGTTAAATA
GATCCTCCACTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGGAGTGTGGGCGAGGTTTCAGTGTGAAGTCAAGTCTCGTCACACACCAGAGGACA
CACACGGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGGGCGAGGCTTCAGTGTGAAGTCA
AATTTCATCACACACCAGAGGACACACACGGGGGAGAAGCCCTATGTCTGCAGGGAGTGT
GGGCGAGGCTTCAGTGTGAAGTCAAGTCTCATCACACACCAGAGGACACACACAGGGGAG
AAGCCCTATGTCTGCAGGGAAGGTGAGTGAGTCATTACCAACAAACCACATCTTAACCAC
AGAAGGATTAATGTTGCCACCAGATAGTCTATACCTCAGCTCTGCGAAGGCTTCAAAGGA
AGTCTGTGACCCCTTACAGTCCTCACAAGTGTCCTGAGTGCAGAAATAACTGGTTAAATA
GATCCTCCACTTTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-123, + strand, RNAz p=0.943395

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-123, + strand, RNAz p=0.943395

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               19-119, + strand, RNAmicro p=0.962014

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               19-119, + strand, RNAmicro p=0.962014

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-307, gnl|bosTau2|chr13 (24162505-24162810)
               

               
               5-307, gnl|Hg17|chr20 (18244229-18244534)
               

               
               5-307, gnl|Mm7|chr5 (142277806-142278111)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-307, gnl|bosTau2|chr13 (24162505-24162810)
               

               
               5-307, gnl|Hg17|chr20 (18244229-18244534)
               

               
               5-307, gnl|Mm7|chr5 (142277806-142278111)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	5-307, gnl\|bosTau2\|chr13 (24162505-24162810)
	5-307, gnl\|Hg17\|chr20 (18244229-18244534)
	5-307, gnl\|Mm7\|chr5 (142277806-142278111)